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Mutant Lines
15-3853-1

15-3853-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence
1. Chromosome: 4; Position: 5931137 [Map]; Strand: c
  - AT4G09340.1 - [+] show detail - SPla/RYanodine receptor (SPRY) domain-containing protein
    Distance: -3502; Region: intergenic
  - AT4G09350.1 - [+] show detail - Chaperone DnaJ-domain superfamily protein
    Distance: 114; Region: intergenic
Flanking Genome Sequence: 15-3853-1 - 5-prime edge
```
GTTCTGTTAC TCACCTTTTT TTGTGTGTGT GTGTGTTATT CTTGGATTTT 
TTCTAAGCTA TCCAAACATT GTTTTAGAGA TATATTTTGT TATGCTCACC 
TAGCGTGATC CAAATAGTCA CATTTGAATA AAACAAAGCG AACAAAATAG 
TAGTTTTGAT AATTGGTAAC TAATGCGGAA TT
```

3 prime edge [+] show sequence

Chromosome: 4; Position: 5931253 [Map]; Strand: c
- AT4G09350.1 - [+] show detail - Chaperone DnaJ-domain superfamily protein
  Distance: 0; Region: exon2 (3UTR)

AACAGAACCA CTAGGCCACT TTATTTTAGT TCAAATGATC TTATAATCTG 
TAATTTTTAA TCTTCGATCT ACATATAAAC TATATGAATT TGTATATACA 
AAGCTCCTTA CCTAGTAAGA AGGATCTTTG AAAACAATCA CAAAAACTAT 
ACAACAAACA GCGAATAATA CGATCAAAAT ATCGAACGTG AGAGCAGTCA 
TTGCTTGATC ACTAAGCTCC ATGTTTCTTC CACCTAACCG GTCAACCATA 
TCAGGTATTG ATTCATATCC CCTAAAATCT TGCTCTTTCG GATC

AT4G09340.1

Model type: Protein coding
Short Description: SPla/RYanodine receptor (SPRY) domain-containing protein
Computational Description: SPla/RYanodine receptor (SPRY) domain-containing protein; CONTAINS InterPro DOMAIN/s: Ran binding protein, CRA domain (InterPro:IPR019589), B302 (SPRY)-like (InterPro:IPR001870), CTLH, C-terminal LisH motif (InterPro:IPR006595), LisH dimerisation motif (InterPro:IPR006594), Ran binding protein-like, CRA domain (InterPro:IPR013144), SPla/RYanodine receptor SPRY (InterPro:IPR003877); BEST Arabidopsis thaliana protein match is: SPla/RYanodine receptor (SPRY) domain-containing protein (TAIR:AT1G35470.2); Has 1270 Blast hits to 1182 proteins in 217 species: Archae - 0; Bacteria - 1; Metazoa - 551; Fungi - 310; Plants - 183; Viruses - 1; Other Eukaryotes - 224 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G09350.1

Model type: Protein coding
Short Description: Chaperone DnaJ-domain superfamily protein
Computational Description: Chaperone DnaJ-domain superfamily protein; FUNCTIONS IN: heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: Molecular chaperone Hsp40/DnaJ family protein (TAIR:AT1G80030.2); Has 22215 Blast hits to 22211 proteins in 3226 species: Archae - 172; Bacteria - 9488; Metazoa - 3742; Fungi - 1942; Plants - 2004; Viruses - 8; Other Eukaryotes - 4859 (source: NCBI BLink).
Link: InterPro Scan - TAIR