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15-3893-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 7554774 [Map]; Strand: c
      • AT1G21550.1 - [+] show detail - Calcium-binding EF-hand family protein
        Distance: -898; Region: promoter
      • AT1G21560.2 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -10; Region: promoter
      • AT1G21560.3 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -10; Region: promoter
      • AT1G21560.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -66; Region: promoter
    Flanking Genome Sequence: 15-3893-1 - 5-prime edge 
    GNNGNAANNN GNAGGGNAAC TACCAGGGGG GGNGGANNAC NAGGNGNCGA 
    ANAGGNNCCT AAAGAGAGAG AGNGANCAAG CGNNNGGGNC ANANANACAC 
    NCGGGNCGTA NAGCNCACAA NNAATCACGG NCCANCATCN GAANACANGG 
    GCNCAGGCTT NTGTNCANAN NGGTNTGTAT GAATAGNAAA ATGAAAAAAT 
    GNGGGGAGGA AANAGGATGC GGTNGGAGAT GCAAAGACAA TGCTANAATT 
    NTCCTCNNAN TTATCNAATC NACANGAAAA CTATAAGCGN GATCGNAGNG 
    CNNGTGCTGN TCACAGGGAA AAATCCACTG GAAAATAGNG GANGGGCATG 
    AATGTGGATG AGGCCGGNGA GAAATANNTA CTAAATGGGG ACNGGACGAC 
    NNAGNTAGGG GANGCGAGAA NGGNACCGAA CATTCNNAGG GGAGANGANG 
    AGGGGGGANG NAACGGTTTA CNGCANANAG AGNGAGAANA GAGNNGNCNA 
    GNGAANAGNG NGGNGCGAAA AGCANAGAAN ANGAGGGAGC GANGGAAGAG 
    NNANGGGGGN GAAGAATAGG GGNAAAANGN ACGANGNGGG GGGGGGNAAN 
    AGNGGGCNGA NAAAANAAAN NGANAGAGNG ANATANNGGC GAGAGGANNG 
    GNGNNANANA NNAGNGAGNG NGAAGATANN AGNGAAANGA GANAGNGAGG 
    NAANAANGAN NAGANAAAAG AANNGNANGA NA

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 7554884 [Map]; Strand: c
      • AT1G21560.2 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 0; Region: exon1 (5UTR)
      • AT1G21560.3 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 0; Region: exon1 (5UTR)
      • AT1G21560.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 15-3893-1 - 3-prime edge 
    GCTACGGCGT GANGTNCGAT GAGAGAAGTT AATTCCTTTT CTAAATGGAG 
    GGTTTCTCTT CATCGAGATG TTTCTTTTAA ATGATATTCT TCTTCTTTCA 
    GTAATGGAAT AATAGCTTCT GTACGAAAGA TCTTTCTGGC ATTTGTAAGT 
    GAACCCATTC CACTCTTCTT GCATTTGTAA GTGTTTTCTA AATTTCTACT 
    CCTGCATGCT CTAATTTGGC CCCAACGAGA ATTTGTGTGT TTGAGTGGTC 
    ATTGAATCGA ACTCAAATTT AGCATTTTTA GGATTTTGAG TCAATTCTAG 
    TTTAGGATTC GTCTCTAATG TTTAATTTAG TGAAGGCTAT GTCATTTTCA 
    GGAATCTGAT TGTTTTCCGT TTAAAGATGA GAACTTTGAT GAATT

AT1G21550.1

Model type
Protein coding
Short Description
Calcium-binding EF-hand family protein
Computational Description
Calcium-binding EF-hand family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: calmodulin like 42 (TAIR:AT4G20780.1); Has 8971 Blast hits to 8616 proteins in 1133 species: Archae - 0; Bacteria - 20; Metazoa - 2955; Fungi - 1509; Plants - 3114; Viruses - 0; Other Eukaryotes - 1373 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G21560.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G01170.1); Has 76 Blast hits to 76 proteins in 15 species: Archae - 0; Bacteria - 4; Metazoa - 3; Fungi - 2; Plants - 67; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G21560.2

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G01170.1).
Link
InterPro Scan - TAIR

AT1G21560.3

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G01170.1).
Link
InterPro Scan - TAIR