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15-3913-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 9454550 [Map]; Strand: c
      • AT4G16790.1 - [+] show detail - hydroxyproline-rich glycoprotein family protein
        Distance: -1296; Region: intergenic
      • AT4G16800.1 - [+] show detail - ATP-dependent caseinolytic (Clp) protease/crotonase family protein
        Distance: 266; Region: intergenic
    Flanking Genome Sequence: 15-3913-1 - 5-prime edge 
    GNGANAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCC AGCCCCACCA AAGTGGTGCT AAAATGATGT 
    GTTGATTAGT AGACACTTTT TCCAGCTTGA CCTGTCAAAA TGATTTAAGT 
    AATTTTTGAT TAATTGACGA GAATAAAGAA CATAAAGTGT TTGAAAAAAT 
    TATATTAGAC TGAATAATTA TACAAAATAC ACTCTTTTGT GTTAATCTCT 
    TTTTTATATA AGATAAATAC AAATCTAAAT GTAAATATTT TTAAATTAGG 
    ATATTGATAA ATAGAGATTT ATTAAATATT TTTTGATTTT CTTACTTTCC 
    ATATATTTGG GCAATTATCT CGAACGTCTT AAATTGAATA GTCTCGGATT 
    CAAATAACAG TTTTACACGT CTACCGTTGA GTCTATACAG TGATTTTAGA 
    TACTAAACTT TAAACCTTAT CAGATCAACA ACAAAACACA ATAAGATAAA 
    TTCCTTTTCT CGATTTTTGA AGTTTATTAT ATTCAGAAGT ATAGATACCT 
    TATCGACAAG TTTACGCTAA GTAAAAGAAA AAGAATCGTG ACTATCTTTT 
    AATCTTCTCC AGTCCAGTGA TAATTGTGTT AGATGGATCT TAGCGTAAAT 
    AGACCAAAAG AAGAGAATAC AGATTCCTCC GGACTCATAT GCCTACGCGA 
    CCTACTCTGG GATATTCTCT AAACGTATTA TCAACTAATT GCTATATTTA 
    TTCTACACCT TTTTACATTT AACAGCTTTT ATAATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 9454551 [Map]; Strand: c
      • AT4G16790.1 - [+] show detail - hydroxyproline-rich glycoprotein family protein
        Distance: -1297; Region: intergenic
      • AT4G16800.1 - [+] show detail - ATP-dependent caseinolytic (Clp) protease/crotonase family protein
        Distance: 265; Region: intergenic
    Flanking Genome Sequence: 15-3913-1 - 3-prime edge 
    ATNAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATGGG 
    GCGGTGGATC ACACTGGTCG GTTACTTTTG TCGACTCTTT AAGATTTCTT 
    TTGACAAACT TATTTCTTTT TATAAAACAA ACTTCACATA AGAAGCATTT 
    GTTTTCAACC ATTAGCTTAA AACATACGCA TAAAGTATAA CCACNTGATT 
    TTTTAAGTTT TTAACCAATG CGATTCTAGC TTCTGCTCTT CCTCTTTCCT 
    TATTTCCTTT TTGATTAGAG AGTCACATAA TTTGACATCA AGACTATGAA 
    CGCACAAACA CAAACAGTGA CATTTAGATG TTTTTTTTTT CCTNGCTNAA 
    ACCNTTCNGG TTNTNAATNT CCANCTNANT NTTNNTNGAA NCTAANTNGA 
    TNGGACNCTA ANGATTNTTT NTNTNATANG GTTTTNANTN GCCAGGGNNC 
    AAAGGCTNAC CCTTTTNANN AAAANCAGNT AATCCTTNAA AACAATNTTG 
    ANTTTTAAAA AGCTACCANC CNGGGCCGTG NACCNCCCGN GCCCNTTAAA

AT4G16790.1

Model type
Protein coding
Short Description
hydroxyproline-rich glycoprotein family protein
Computational Description
hydroxyproline-rich glycoprotein family protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G60380.1); Has 8255 Blast hits to 6141 proteins in 463 species: Archae - 4; Bacteria - 400; Metazoa - 3327; Fungi - 1159; Plants - 2082; Viruses - 247; Other Eukaryotes - 1036 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G16800.1

Model type
Protein coding
Short Description
ATP-dependent caseinolytic (Clp) protease/crotonase family protein
Computational Description
ATP-dependent caseinolytic (Clp) protease/crotonase family protein; FUNCTIONS IN: enoyl-CoA hydratase activity, catalytic activity; INVOLVED IN: fatty acid metabolic process, metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Enoyl-CoA hydratase/isomerase, conserved site (InterPro:IPR018376), Crotonase, core (InterPro:IPR001753); BEST Arabidopsis thaliana protein match is: delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (TAIR:AT5G43280.1); Has 38027 Blast hits to 38009 proteins in 2336 species: Archae - 484; Bacteria - 24986; Metazoa - 1599; Fungi - 771; Plants - 617; Viruses - 0; Other Eukaryotes - 9570 (source: NCBI BLink).
Link
InterPro Scan - TAIR