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15-4118-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 5399213 [Map]; Strand: c
      • AT1G15690.1 - [+] show detail - Inorganic H pyrophosphatase family protein
        Distance: 0; Region: exon1 (CDS)
      • AT1G15690.2 - [+] show detail - Inorganic H pyrophosphatase family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 15-4118-1 - 5-prime edge
    GNGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCATA CAACGTACCA TTGGAAAAGC GAAAAGGCGA
    TACCAATCAC CGCACAAATC GGTACAAGGA TCTCCGTCCA GAGCTCCGGT
    AACAAAGCAG GCGCCACCAT CTTCTCTCCT CCGTATAAGA GAAAAACAAA
    TAAAAACAAA TAAACAAAAG AAAGAGAACC GCTTCGCGCG AGAGAGAGAA
    CAAAGAACAC ACAGAGAGAG AGGTGAAGAA GAAAATGAGG CGTAAATAGG
    TGAGGATATC GTGTCGTTAT ATAAGACTAG CTCTCTCCTT CTTCTCTTTG
    GATGCTCCCA TCCAGAAAGA TAGATGGAAT CCGGTACGGT TGGGTACACG
    TTTTTTACGC TACACCATCA GAACTCATTT ACGCGCGTGT TGACTACGCT
    CTATTTGTCC GAATTTAGAT TCATCCTCAT CTATCCGGTA GTTGTCGGAC
    ACGACAGCAA AGTAAAGCT
  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 5399262 [Map]; Strand: c
      • AT1G15690.1 - [+] show detail - Inorganic H pyrophosphatase family protein
        Distance: 0; Region: exon1 (CDS)
      • AT1G15690.2 - [+] show detail - Inorganic H pyrophosphatase family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 15-4118-1 - 3-prime edge
    GTTTGTATCT CGCGTGAAAC TCACCTCTGA CCTCGGCGCA TCGTCTTCCG 
    GTGGAGCTAA CAATGGGAAG AATGGATACG GTGATTATCT AATCGAGGAA
    GAGGAAGGTG TTAATGACCA GAGTGTTGTC GCTAAGTGCG CNTGAGATTC
    AGACTGCTAT TTCCGAAGGT AAGATCTATT GATACTTTAT TCAGATCTCA
    CTGTTCTGTT TTTAGATCTG GCTCTGTTTT TTGATTGGTG GTTGTTTGAT
    GATGTTTTGG ATTGTTAGAA CGTTGAAATT ACTAATTCAG TATCTTGTGA
    AATCTGAGAT GATGTGTGTT TTCTGAGTGA ATAATATTGG GATCTGTTTG
    GTTGTTGTGG GAACAGGTGC AACTTCATTC CTATTCACGG AGTACAAATA
    TGTTGGTGTC TTCATGATTT TCTTTGCTGC TGTTATCTTT GTTTTCCTCG
    GCTCTGTTGA GGGATTCAGC ACTGATAACA AGCCTTGTAC TTACGACACC
    ACCAGAACCT GCAAGCCTGC ATTGGCTACT GCAGCTTTCA GTACCATTGC
    TTTCGTGCTT GGTGCTGTTA CCTCTGTTCT ATCTGGTTTC CTTGGGATGA
    AGATTGCTAC ATACGCTAAT GCTAGGACCA CTTTGGAGGC GAGGAAAGGT
    GTTGGAAAGG CGTTCATTGT TGCATTCAGG TCTGGTGCTG TGATGGGTTT
    CCTTCTTGCA GCGAGTGGTC TATTGGTGCT TTACATTACT

AT1G15690.1

Model type
Protein coding
Short Description
Inorganic H pyrophosphatase family protein
Curator Summary
Encodes a H(+)-translocating (pyrophosphate-energized) inorganic pyrophosphatase (H(+)-PPase; EC 3.6.1.1) located in the vacuolar membrane. Expression is found in all tissues examined, including meristems and floral organ primordium. Expression is particularly enhanced in pollen, and is repressed by light. Over expression and loss of function phenotypes suggest AVP1 is involved in regulation of apoplastic pH and auxin transport. The effect on auxin transport likely involves effects of extracellular pH on subcellular localization of auxin efflux carriers such as PIN1.
Computational Description
AVP1; FUNCTIONS IN: hydrogen-translocating pyrophosphatase activity; INVOLVED IN: response to water deprivation, response to salt stress, establishment or maintenance of transmembrane electrochemical gradient, leaf development, auxin polar transport; LOCATED IN: in 10 components; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Inorganic H+ pyrophosphatase (InterPro:IPR004131); BEST Arabidopsis thaliana protein match is: Inorganic H pyrophosphatase family protein (TAIR:AT1G16780.1); Has 6470 Blast hits to 6448 proteins in 793 species: Archae - 67; Bacteria - 1322; Metazoa - 5; Fungi - 1; Plants - 304; Viruses - 0; Other Eukaryotes - 4771 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G15690.2

Model type
Protein coding
Short Description
Inorganic H pyrophosphatase family protein
Curator Summary
Encodes a H(+)-translocating (pyrophosphate-energized) inorganic pyrophosphatase (H(+)-PPase; EC 3.6.1.1) located in the vacuolar membrane. Expression is found in all tissues examined, including meristems and floral organ primordium. Expression is particularly enhanced in pollen, and is repressed by light. Over expression and loss of function phenotypes suggest AVP1 is involved in regulation of apoplastic pH and auxin transport. The effect on auxin transport likely involves effects of extracellular pH on subcellular localization of auxin efflux carriers such as PIN1.
Computational Description
AVP1; FUNCTIONS IN: hydrogen-translocating pyrophosphatase activity; INVOLVED IN: response to water deprivation, response to salt stress, establishment or maintenance of transmembrane electrochemical gradient, leaf development, auxin polar transport; LOCATED IN: in 7 components; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Inorganic H+ pyrophosphatase (InterPro:IPR004131); BEST Arabidopsis thaliana protein match is: Inorganic H pyrophosphatase family protein (TAIR:AT1G16780.1); Has 5891 Blast hits to 5869 proteins in 792 species: Archae - 67; Bacteria - 1317; Metazoa - 5; Fungi - 0; Plants - 299; Viruses - 0; Other Eukaryotes - 4203 (source: NCBI BLink).
Link
InterPro Scan - TAIR