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15-4131-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22186975 [Map]; Strand: c
      • AT3G60070.1 - [+] show detail - Major facilitator superfamily protein
        Distance: -646; Region: promoter
      • AT3G60075.1 - [+] show detail - pre-tRNA
        Distance: -59; Region: promoter
      • AT3G60080.1 - [+] show detail - RING/U-box superfamily protein
        Distance: -333; Region: promoter
    Flanking Genome Sequence: 15-4131-1 - 5-prime edge 
    TGATAAACTA ACAAAATCGG TTATACGATA ACGGTCGGTA CGGGATTTTC 
    CCATCCTACT TTAGTTGACA AACAAATGTA TAGCAAAGTA GTCACATTTA 
    AATATCTAAT AACGTGTAAA AACATCAAAA GTCGTTTTGG TCGAGTGGTT 
    AAGGCGTGTG CCTGCTAAGT ACATGGGGTT TCCCCGCGAG AGTTCGAATC 
    TGTCAGGCGA CGTATTTATT TTTTTAGTGG CATTTTAAAT GTTGATGCTG 
    CAACAACGTG CCTTCTCGTG TAAGCAAGCA ATAAAATAAG GAAAGTGAGA 
    AAATCACAAT CATAAAGATT TGAGCTTTTA ATTGTTTGTT TTCTTATCTA 
    ATGAAAGTAT GGGCGTTACA AGCGTTTAGT AGTAGATTCC AGTTGCCTGC 
    AAAAAGATTA CAACTTTTTA AAAGAATCTC TGACAAATTG CTATCAAGAT 
    TCTATCCATT AACTGATCCC TTGCAAACAA AATTCCAAAA GTCACCCATA 
    AAAGCCATAA CCAAATCTGG AAAATGAAAC CGACATGACC GCATGATTTC 
    TCAGACTATC CTGCCTCTCT CATTCACTCT CTGATCACTT CAATTTCCAA 
    TATTTTATAA TACTATTTTT TCAAGGTAAA AGAAAAGGTC TTATGTTCAT 
    AGAATGACTC ACATAATGAC GTTGGAAGAA AGGTATTAGT TAGGGTTAGT 
    GGAGAGAGTG CTCAATATGA AACAAGTTTT TCTCTGNCTT CTTACTCCTT 
    CTTTTTCCCT CCTTTGGGGG AAAAATTGTT GCTTTTGAGG TTCTTATANA 
    TCAATCTCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22180330 [Map]; Strand: w
      • AT3G60040.1 - [+] show detail - F-box family protein
        Distance: -602; Region: promoter
      • AT3G60050.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 15-4131-1 - 3-prime edge 
    GGTGTAACCC AAATTTCGTA GTGTATAGTA CATTGGTGAG CTATTTAAGA 
    AAGGCAGGGA AGCT

AT3G60040.1

Model type
Protein coding
Short Description
F-box family protein
Computational Description
F-box family protein; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: male gametophyte, cultured cell; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), Pentatricopeptide repeat (InterPro:IPR002885), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like superfamily protein (TAIR:AT1G06630.2); Has 42185 Blast hits to 11085 proteins in 246 species: Archae - 5; Bacteria - 27; Metazoa - 105; Fungi - 161; Plants - 41065; Viruses - 0; Other Eukaryotes - 822 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G60050.1

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR) superfamily protein
Computational Description
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G55630.1); Has 44102 Blast hits to 13509 proteins in 285 species: Archae - 3; Bacteria - 33; Metazoa - 397; Fungi - 634; Plants - 41680; Viruses - 0; Other Eukaryotes - 1355 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G60070.1

Model type
Protein coding
Short Description
Major facilitator superfamily protein
Computational Description
Major facilitator superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT2G44280.2); Has 1328 Blast hits to 1310 proteins in 435 species: Archae - 0; Bacteria - 1041; Metazoa - 121; Fungi - 3; Plants - 58; Viruses - 0; Other Eukaryotes - 105 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G60075.1

Model type
Pre-tRNA
Short Description
pre-tRNA
Computational Description
tRNA-Ser (anticodon: GCT)
Link
InterPro Scan - TAIR

AT3G60080.1

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Computational Description
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G44330.1); Has 9920 Blast hits to 9845 proteins in 282 species: Archae - 0; Bacteria - 98; Metazoa - 2725; Fungi - 927; Plants - 4887; Viruses - 7; Other Eukaryotes - 1276 (source: NCBI BLink).
Link
InterPro Scan - TAIR