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15-4175-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 7602248 [Map]; Strand: c
      • AT1G21650.3 - [+] show detail - Preprotein translocase SecA family protein
        Distance: 0; Region: exon3 (CDS)
      • AT1G21651.1 - [+] show detail - zinc ion binding
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 15-4175-1 - 5-prime edge 
    TCTCTGATAG TAAGGTCCTT AATTCGAGCT ATATAAATCG TCATGCAAAA 
    CACGCTATAT GCAGGACTTC TCCCATGTGC ATACATTTAA AGGTCATCAG 
    GATAAAGTAA TGGCCTTGAT ACACATCGAG GGAACAGAAC CAGTATGTGT 
    TAGTGGCGAT GGTGGAGGAG GTATCTTTGT ATGGAGCACT ACTTTTCCTC 
    TGGAAGAACA GCCGCTAAGA AAGTGGTATG AGCCAAAAGA CTGGCGATAT 
    ACTGGCATTC ATGCATTGGC ATACTCAGAA TATGGGCATG TGTACACTGG 
    CAGTGGAGAT AACACTATCA AAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 7602364 [Map]; Strand: c
      • AT1G21650.3 - [+] show detail - Preprotein translocase SecA family protein
        Distance: 0; Region: intron2 (CDS)
      • AT1G21651.1 - [+] show detail - zinc ion binding
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: 15-4175-1 - 3-prime edge 
    ATCAGAGAGC TGCTGAGAAG AACATAAACA AAAATCTATA AAGGACCTAT 
    CACTAACTTT ATACGCATAT GTACCTTCAG AGACCATATA AGGATAGTTC 
    TATCATATGA AGAGCTGAAG AGAAACCCAC CTATACAGAG AAAAGGAATA 
    TTGAGTACCT CATTGATCAT CTATTCAACA TACATTGTTA TAAGATTTGT 
    ACAGTTTATA AGAAAGTACA AAATATAAGA AGAAGGTGTA CCTCCAACGG 
    CTAAACCTGT GACAGAGTCT TGGTGTCCCC GCATGTCTTT AGATCTCACC 
    TTTCCTTCTG AGACTCTCCC AGGAAAATCT ATGTCAACCT TACCCTCCTC 
    TGCTTCATCG CCAATTTTCA TTCCAGGCAA CTCTTTGTCC ACTTCTTTGG 
    ATTCCACTTC TACCAGGCGA CATAATTCAC TTTGAGCCAA ACAGAACTGT 
    TTCCTTTTCC CATAAATCGT CTTATGCAAT CTACTCATAG AATTGAACCT 
    AGGTTTCATG ACCAGCTCCC TGATGCATTT CCATAGATCA GTCAAAACGG 
    GACGTGCCTG AGGATCAAGA CAGCAACATT GACGAAGAAT TTCAACCATC 
    GATTTAAACT TCCCTTGGAG TTCAGATTCC AAACTTAGTT TCTCCGTAAT 
    ACCTGTGTAT AGCACCAAGA TATCCTCAAT ACCCTCTTCA CAGCCTTTTC 
    CATCCACACA ATTCACACTT TCAATAAACT CCTCGGTA

AT1G21650.3

Model type
Protein coding
Short Description
Preprotein translocase SecA family protein
Curator Summary
Encodes a component of the thylakoid-localized Sec system involved in the translocation of cytoplasmic proteins into plastid. Loss-of-function mutations result in arrest at the globular stage and embryo lethality.
Computational Description
Preprotein translocase SecA family protein; FUNCTIONS IN: ATPase activity, zinc ion binding, P-P-bond-hydrolysis-driven protein transmembrane transporter activity, ATP binding; INVOLVED IN: intracellular protein transport, protein targeting, protein transport by the Sec complex, protein import; LOCATED IN: internal side of plasma membrane, membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), Zinc finger, RING-type (InterPro:IPR001841), SecA, preprotein translocase (InterPro:IPR022491), WD40 repeat (InterPro:IPR001680), SecA motor DEAD (InterPro:IPR014018), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), SecA Wing/Scaffold (InterPro:IPR011116), WD40-repeat-containing domain (InterPro:IPR017986), SecA preprotein, cross-linking domain (InterPro:IPR011130), SecA DEAD-like (InterPro:IPR011115), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), SecA conserved site (InterPro:IPR020937), WD40 repeat, subgroup (InterPro:IPR019781), SecA protein (InterPro:IPR000185); BEST Arabidopsis thaliana protein match is: zinc ion binding (TAIR:AT1G21651.1).
Link
InterPro Scan - TAIR

AT1G21651.1

Model type
Protein coding
Short Description
zinc ion binding
Computational Description
zinc ion binding; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), Zinc finger, RING-type (InterPro:IPR001841), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Preprotein translocase SecA family protein (TAIR:AT1G21650.3); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR