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15-4261-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 17745729 [Map]; Strand: c
      • AT3G48060.1 - [+] show detail - BAH domain ;TFIIS helical bundle-like domain
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: 15-4261-1 - 5-prime edge 
    GTGTCAGATA CTCTGAGACA AATGCCTCTT TGGCTGGTTC GGATGATGTT 
    GGAATGAATC TTCTTGCTAG TGTTGCTGCT GATGAGATGT CTAAATCGCC 
    TGTTGCATCA CCCTCAGTAT CTCAGCCTCC AAATTCCTTG ATGAATGAAA 
    ATTCTACTGT AGGGAACAAT ACAAAGCTAA TGGCTTCGGA TGGCTTGCCT 
    CATAAGCAAC ATCAAGCTGT TCGCCCCACT GTCAGTAATG AGCAAGGTGA 
    GCAACATGTT AGCAGTAGTG GCACACAGTT GGAGTCAGAG ATAAAAAATG 
    AATCTAAGAC CGGAGATCGT GTTAAGAGCT CGAATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 17745845 [Map]; Strand: c
      • AT3G48060.1 - [+] show detail - BAH domain ;TFIIS helical bundle-like domain
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: 15-4261-1 - 3-prime edge 
    TCTGACACAA CTTTCAATCA AAGCATTCAT CGAACTGAGT GTTCCGCCAT 
    GTCTTTCTCC AGATTTGAAC TCATTTCCTA ATGAAGATGT GGCTTTAACA 
    TTCCCAGATG CTTTATCAGA ATCCTTAAGA GCCCCTTCGC GCTCATCACC 
    AGCAACAACA AGTGGTGAAC CAGTTGCCTC TTGCGAGCCT GTCAATATAT 
    CTTTTAATTC ATTGCTTTGC CAAGACTCGG CATTCAAGAC AGAGCTCACA 
    TCAGCTCGAT AAGAATGATT TTTTTCTCTC CAGTTATTGT CACACAGTTC 
    CTGCTTCACC GCATGCACAG GTGAAGAAAC TCTGCTATTC ACTGGTGCAG 
    GGTCCTCCAA AGAGCCTCCA CTCACACTTT GAGCAGGACT TCGACCCCGC 
    GGCAGCTTCA CAATCAATTT ATTACCGGAA CCCTCAGTAA GAGGAAACTC 
    AAGAGTCTTT TCAGATGTCA AACTTGATTG AGAAATTTTC TCAGAAGGGA 
    CATTCCTGTG TGATGAGAAG CT

AT3G48060.1

Model type
Protein coding
Short Description
BAH domain ;TFIIS helical bundle-like domain
Computational Description
BAH domain ;TFIIS helical bundle-like domain; FUNCTIONS IN: transcription regulator activity, DNA binding; INVOLVED IN: transcription; LOCATED IN: nucleus; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Transcription factor IIS, N-terminal (InterPro:IPR017923), Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type (InterPro:IPR003617), Bromo adjacent homology (BAH) domain (InterPro:IPR001025), Transcription elongation factor, TFIIS/elongin A/CRSP70, N-terminal (InterPro:IPR010990); BEST Arabidopsis thaliana protein match is: BAH domain ;TFIIS helical bundle-like domain (TAIR:AT3G48050.2); Has 5615 Blast hits to 3296 proteins in 434 species: Archae - 6; Bacteria - 1034; Metazoa - 2145; Fungi - 615; Plants - 463; Viruses - 15; Other Eukaryotes - 1337 (source: NCBI BLink).
Link
InterPro Scan - TAIR