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15-4415-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 614322 [Map]; Strand: c
      • AT4G01455.1 - [+] show detail - pre-tRNA
        Distance: -2390; Region: intergenic
      • AT4G01460.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: -6437; Region: intergenic
    Flanking Genome Sequence: 15-4415-1 - 5-prime edge 
    CCAATATGAA CCAATTAAGG TGGCTAACAT TTGTTAAGTA ACTAATTAAG 
    GTGGCTTACA GCTTACTGAT GCAATGATAC GTCGTCCTGT GTACGTAATC 
    AATGTCTTAA ATAAGCAGTA ATAAAAAGAG AATTTATATT CTCCAGCAAA 
    TTTATCTTTG TTTGGAATCC TCTAGAAAAG GTAATCCATA TTCTCCAGCA 
    AATTATCTAA AGAAATGTTA TTACTATTAG GTACCATAAA ACCTTACAAA 
    GAGTCGGATT GTCGGAATAT TGATTCGTAT ACTAGTTATA TTTCCTCTAG 
    CCCTAATAAA TCAAAGTTTT AGATTTTCTT TTTGAAATAA AACAATAGAT 
    TTATAAAAAT TGTCTATGCA TTTTTTATTA GTTAATGATA TAAATTGTAA 
    AAGTTAATAA AAAATATATT TATACCATTG ATTTTTAACT ATAAAAAATT 
    CTTAATCACA AAATGATGTG ATTATATAAA TTTATTTTTT AATATTTGAT 
    TCAGTATTAT ATAATTTTTT TTTTTNCGCN GGNCNAATTT TANAAGGTTT 
    AAAAATCCTT TGGNNTGGAA NCTTTACCAA ATTTTACCCN CCGTTTTNGC 
    TAGTTTTTTA AAAAAANTGG ANGGCNAAAA ANNCTTTNNN ANATTNNTTT 
    TNTTTGNGGG AAGGGNANGC CCCCNNNTTT TTTTTTTTTT TANAANAAAC 
    CTNGGGGCCN NNCCTTTATN NAA

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 614438 [Map]; Strand: c
      • AT4G01455.1 - [+] show detail - pre-tRNA
        Distance: -2506; Region: intergenic
      • AT4G01460.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: -6321; Region: intergenic
    Flanking Genome Sequence: 15-4415-1 - 3-prime edge 
    CATATTGGAC CCGTTTTTTC TTTAAGGCAT TTTTTTTTCT CATCCACTTG 
    ATGATTTTGA AAGTTTTTTC CTTCTCTTGT ATCTACAAAT TAAATGAATA 
    AAAATNGATC AAGTCTTTCA AGTCTTTTTT TTTTTNANTG GGGANCCNTN 
    AAAAANTTTN ANGGCCNAAN NTNCCNCCCN GGNCCGNAAN CCNCCCNGNC 
    CNNNAAAAAA AAAANNNNAN GGGNNNNCNN CCNNNNNANN NNNNNAAAAA 
    CCNGNNNCNG NNAAANNNNN NNNNCCNNNN AANNNGG

AT4G01455.1

Model type
Pre-tRNA
Short Description
pre-tRNA
Computational Description
tRNA-Glu (anticodon: TTC)
Link
InterPro Scan - TAIR

AT4G01460.1

Model type
Protein coding
Short Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Computational Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT3G61950.1); Has 1536 Blast hits to 1519 proteins in 127 species: Archae - 0; Bacteria - 0; Metazoa - 22; Fungi - 44; Plants - 1468; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Link
InterPro Scan - TAIR