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15-4501-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 27096275 [Map]; Strand: c
      • AT1G71970.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 2248; Region: intergenic
      • AT1G71980.1 - [+] show detail - Protease-associated (PA) RING/U-box zinc finger family protein
        Distance: -1628; Region: intergenic
    Flanking Genome Sequence: 15-4501-1 - 3-prime edge 
    GCTCTAAGTG TGATTGAGAT GTAGCTTGAG ACCAAAGAGA CCGTTATCAT 
    CATCAACCAT CATGTCCTCT CTTTAGCACA TGGAAAGCAA TATACTATAG 
    AAATTGTACT ATATATATGG ATCAAGCATA CGAATCAGAG TCCATTTTGA 
    TGTGAAGGCA TCAAATCTGC AAAATTAAAT CAAGTTTCTT GAGCGACAAA 
    CAAGCTGATG ATATCATTCT TGCACTTGGA GTATTTTCTA CAACATAACC 
    TAAGCCGGTG GTTATTTAAT AATGTTTAGT AATCTTGAAT T

AT1G71970.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G22680.1); Has 58 Blast hits to 58 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G71980.1

Model type
Protein coding
Short Description
Protease-associated (PA) RING/U-box zinc finger family protein
Computational Description
Protease-associated (PA) RING/U-box zinc finger family protein; FUNCTIONS IN: peptidase activity, zinc ion binding; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: Protease-associated (PA) RING/U-box zinc finger family protein (TAIR:AT1G22670.1); Has 15658 Blast hits to 9675 proteins in 411 species: Archae - 0; Bacteria - 271; Metazoa - 3014; Fungi - 1211; Plants - 4865; Viruses - 29; Other Eukaryotes - 6268 (source: NCBI BLink).
Link
InterPro Scan - TAIR