1. Home
  2. Mutant Lines
  3. 15-4562-1

15-4562-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 9358102 [Map]; Strand: c
      • AT1G26960.1 - [+] show detail - homeobox protein 23
        Distance: 642; Region: intergenic
      • AT1G26970.1 - [+] show detail - Protein kinase superfamily protein
        Distance: -1580; Region: intergenic
    Flanking Genome Sequence: 15-4562-1 - 5-prime edge 
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGTCCGTT 
    ACTGACACTG CTCGACGACT CCAAACTTAG TGCCTTGGTG GTTCACAACT 
    TTTGTAAGTC ATGGTGTGTG TTATTAATTA TTATTATTTT TTAATTAAAG 
    GTCCGAATGG CGACTGCGTT TTGCGGTGCG GAAGAAGTGC NGGTGCNGGT 
    TCAAATAGTA ACAAAAATAT ATAAATACAT ATGTATATGT AGAGATTTTG 
    ACACTGTTGC GGTGCGGTTT TGGGTACGGT GTATGTCACC ATTCATAGCC 
    TAAGAGATGG CTTATATGAA TAACAAATTT GGAGTCGTCG GGCAATGTCA 
    GTGTCGATGA AAGGGTAAAA AGTGTTGGGT CCATTTTCAG AAAGAGAATG 
    ACCACTTTCC AACCCTATTT GTTTGCATCC TCTCCTCGGA ATCTGTAAAT 
    TGATGCTCTT TCTTTCACAC ACTTCACATT TTACTTCAAC CGTGCCATTT 
    AACTATATGA TTTCTACAGT TTATTGTACC GCTAATCGTA ATTAATGATC 
    TATTTTTAAG ATCATGTCTT CTATTTTTGT TCATCTTATA GACTTAATTA 
    TGACATAAGC ATAAATTTGT TTCATGGAAA AGTCTTTTTG GGTGGGTTTT 
    TAAAATTTTT ATTCTTANAG TTTTCTGGAT ATTANTTGNA CNATATAAAA 
    GCACATGGNT CAAACTTTTT TTTAATGGCT AATCATNTGG CCCATATGAT 
    NGATTAANTT ATCATNTAAT NTGNTGAANA TTTCCCCCCN TTAATTN

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 9358182 [Map]; Strand: c
      • AT1G26960.1 - [+] show detail - homeobox protein 23
        Distance: 722; Region: intergenic
      • AT1G26970.1 - [+] show detail - Protein kinase superfamily protein
        Distance: -1500; Region: intergenic
    Flanking Genome Sequence: 15-4562-1 - 3-prime edge 
    GCTCTTTATA CATTATATCT CTACCGTTTA ACTTGTATTG GAGCCGCGTT 
    TTAATTAGTA AGTGGTGTAT TTTGCATCGC ACCGATACAA ATGTTAGCAA 
    TCACACACCC ATGGAATCTA TGGGTTTTGT TTTTGTTTGT TTTTTTTCCG 
    AATATGTGTA AAAAGACCTC ATTTGACTGG TAAATTAAAA CCTATACGAG 
    TATTAACAAT GACTAAACGA GTTAAAATGG AATTGCATAG CATTAGAAAA 
    AACTTTTCGG AAAATGAAAA GGTGATAAAG TTTCCATTGA TGATTAGTCT 
    AGCGCCGGGT GGAATAAAAA TTGACTGGGG AACAAGAAAG CGACAGAATC 
    TGAAAGCCAA GAGGGCAAGA GGATTATCTT CGTATTCTAA CGTTGACAAC 
    CAAACACCGA GGTTAAGCT

AT1G26960.1

Model type
Protein coding
Short Description
homeobox protein 23
Curator Summary
Encodes a homeodomain leucine zipper class I (HD-Zip I) protein.
Computational Description
homeobox protein 23 (AtHB23); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to gibberellin stimulus, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Helix-turn-helix motif, lambda-like repressor (InterPro:IPR000047), Leucine zipper, homeobox-associated (InterPro:IPR003106), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: Homeobox-leucine zipper protein family (TAIR:AT1G69780.1); Has 11101 Blast hits to 11053 proteins in 666 species: Archae - 0; Bacteria - 4; Metazoa - 8567; Fungi - 242; Plants - 2058; Viruses - 5; Other Eukaryotes - 225 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G26970.1

Model type
Protein coding
Short Description
Protein kinase superfamily protein
Computational Description
Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, N-terminal protein myristoylation; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G69790.1); Has 119741 Blast hits to 118328 proteins in 4438 species: Archae - 125; Bacteria - 14003; Metazoa - 44350; Fungi - 10257; Plants - 33212; Viruses - 391; Other Eukaryotes - 17403 (source: NCBI BLink).
Link
InterPro Scan - TAIR