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15-4632-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 11733512 [Map]; Strand: w
      • AT5G31804.1 - [+] show detail - transposable element gene
        Distance: -11948; Region: intergenic
      • AT5G31821.1 - [+] show detail - transposable element gene
        Distance: -5765; Region: intergenic
    2. Chromosome: 5; Position: 11735823 [Map]; Strand: w
      • AT5G31804.1 - [+] show detail - transposable element gene
        Distance: -14259; Region: intergenic
      • AT5G31821.1 - [+] show detail - transposable element gene
        Distance: -3454; Region: intergenic
    Flanking Genome Sequence: 15-4632-1 - 5-prime edge 
    GNGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTGGTAAGA ATGAAGATAG CAAAGATTAA AATTCATCAA 
    ACATAATTTA GAATTTCTTT TGAGTGGAAT CTATCAAAAA TGTCTCAGCT 
    TCTCTCCCGA CTCTCCAATC TCTCCCCCAG GAGCCCATTC ACTCGTAAGC 
    NTTTGAGAAA TTAGAAGAAG GTTGGTTAGT GTTTTGGAGT CGAATATGAC 
    TTGATGTCAT GTGTATGATT GAGTATAAGA ATTTAAACCG CAACCGGATC 
    TTAAAGGCGT AAGAATTGTA TCCTTGTTAG AAGACACAAA GCCAAAGACT 
    CATATGGACT TTGACTACAC CATGAAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 7545418 [Map]; Strand: c
      • AT1G21529.1 - [+] show detail
        Distance: -740; Region: promoter
      • AT1G21530.1 - [+] show detail - AMP-dependent synthetase and ligase family protein
        Distance: 0; Region: exon2 (CDS)
      • AT1G21530.2 - [+] show detail - AMP-dependent synthetase and ligase family protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 15-4632-1 - 3-prime edge 
    CCCACATCTT ATCCGGTTTA GCCACCACCG CAGCTTCCTT CACCACCGGA 
    TTTGTATACA GAACATTCTC AATCTCTGCG CTGCTTATAT TTTCTCCTCC 
    GCATATGATC ACATCTTTTG ACCGATCTTT GATCTCCAAG TAACCATCTT 
    TGTGTATAAC CCCGATGTCT CCAGAGTAGA ACCACCCGTC CTCTTTCATA 
    CAAGCCGCAG TTCCTTGAGG GTCTTTGTAG TATCCCAACA TGACTGAGCT 
    GCCTCTGAAA ACAATCTCTC CAACCGAAAC TCCGTCGTGT TTCACACTCT 
    TTCCTGTTTT GCGATCCCTT ACATCGACTT CCGTGAATCC GAGTGTTCTT 
    ACTCCTTGCC TTGACTTCAG CCTAGCTCTC TCCAATGGAT CAAGATGGTC 
    CCACTTAGGC TTCCAAGCAC ATGACACAAC CGGACCGCTA GTCTCTGTTA 
    AACCGTATGA GTGGCTGACG TTGAAACCAA GTGACTCCGC TCGGGAGATA 
    ATGGTTGCTG GTGGGGGAGC TCCAGAGGTC ATAACCTGAT TCAAAGTTCA 
    TAAAACCGAA ACAGAGAGAA ATGTTCATTC ATAACGCTTT CAATCACAAA 
    AAATCTCAAA GTAAAGCTAC CANCCCGGGC CGNCGACCAC CGGNCCCNTN 
    NA

AT1G21529.1

Model type
Other RNA
Link
InterPro Scan - TAIR

AT1G21530.1

Model type
Protein coding
Short Description
AMP-dependent synthetase and ligase family protein
Computational Description
AMP-dependent synthetase and ligase family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: metabolic process; CONTAINS InterPro DOMAIN/s: AMP-binding, conserved site (InterPro:IPR020845), AMP-dependent synthetase/ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: AMP-dependent synthetase and ligase family protein (TAIR:AT1G21540.1); Has 77218 Blast hits to 70321 proteins in 3603 species: Archae - 1163; Bacteria - 50491; Metazoa - 3382; Fungi - 3676; Plants - 2327; Viruses - 1; Other Eukaryotes - 16178 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G21530.2

Model type
Protein coding
Short Description
AMP-dependent synthetase and ligase family protein
Computational Description
AMP-dependent synthetase and ligase family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: metabolic process; CONTAINS InterPro DOMAIN/s: AMP-binding, conserved site (InterPro:IPR020845), AMP-dependent synthetase/ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: AMP-dependent synthetase and ligase family protein (TAIR:AT1G21540.1); Has 77153 Blast hits to 70454 proteins in 3601 species: Archae - 1159; Bacteria - 50507; Metazoa - 3344; Fungi - 3637; Plants - 2272; Viruses - 1; Other Eukaryotes - 16233 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G31804.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family (Athila), has a 3.3e-259 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)
Link
InterPro Scan - TAIR

AT5G31821.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
CACTA-like transposase family (Ptta/En/Spm), has a 6.2e-86 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)
Link
InterPro Scan - TAIR