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Mutant Lines
15-4798-1

15-4798-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

3 prime edge [+] show sequence

Chromosome: 1; Position: 135751 [Map]; Strand: w
- AT1G01340.1 - [+] show detail - cyclic nucleotide gated channel 10
  Distance: -429; Region: promoter
- AT1G01340.2 - [+] show detail - cyclic nucleotide gated channel 10
  Distance: 0; Region: exon1 (5UTR)
- AT1G01350.1 - [+] show detail - Zinc finger (CCCH-type/C3HC4-type RING finger) family protein
  Distance: -373; Region: promoter

GACGGGACCA GTTGCTTGAA TTGAAGAAAA CGCCGTTCAC CGACTTCCGT 
TTATTAGCCG AATCTTACTA TCTCGCCGTT ACCTACTTCG TTTCAGGTTA 
GTTTGATGAT AGAATTTTGA TTCCGATTTC CGTTTTTGTT CTTTTTCGTC 
TGAATTTATT TTGCTGTTTC TCAGAACCGA AACGCTTAGA TATATGTCTT 
TCGTTTATGG TCAATGTTTT TTTGAAATTT GGATTTCTTA TCTTTGATGA 
ACAGTGTTTT TAAGTTGTTC GTGTGGTTTC CATTTATTGA GCAGGAATGG 
GTAGGAATTA CAGGATTTGG TATAATCTAA TGTTAGGTGG AAATTGACTG 
ATTCTAGGTT CTCTAATTAA CCTTTTCAAG AAAGAAATAT TTAAAAACAC 
ATACACACAA CACAATTGTA TTTGTAGTTA GGTGTCTACT TGCTTATTTT 
TAATTGGTAT TGGGGATTAT CATTGTACGT AATCATGTAG AANAATT

5 prime edge [+] show sequence

Chromosome: 1; Position: 135867 [Map]; Strand: w
- AT1G01340.1 - [+] show detail - cyclic nucleotide gated channel 10
  Distance: -545; Region: promoter
- AT1G01340.2 - [+] show detail - cyclic nucleotide gated channel 10
  Distance: -36; Region: promoter
- AT1G01350.1 - [+] show detail - Zinc finger (CCCH-type/C3HC4-type RING finger) family protein
  Distance: -257; Region: promoter

GTCCCGTCGT CGCTGGAAAG AGAGAGAGAC TCATATGGCG GTTACTTGTA 
TCTCTCTCTG TATATTGTTT CCTGGAAAAG TAGTATATGA GAATTTTATT 
ATACGACAAA AAGGGAGGGA AAGAGGAATA TTATGCAATT AAATATTATA 
AAGTCTGTTC AATTGAAAAT CATTTCATAA AACAATTTCA TTCAGATGAA 
TGACTTGGTC AAAGTCAGAC GGCGAGAATA AGCAAGTTGC CAAATTTTGA 
AGTACCGGGC CCATTATGAA TATTGAGCCC ATTTAGATTC ATGACCCAAA 
ATGAAGTAAC CGCCCCACCA TATGTTCCTT ATTTCTTTTC TCTCTCTTCA 
CACTGATTTA TTTTCTGTCG GAAAATACGG ACGGCGTCGT CGTTCTTCTT 
GACGGTGTAG CTCACCGGCG ACGATTTTTA GATTTTTTTT TAAAGGTAAC 
ATATTCTTCC TTGNGTTTAA TCTCCATACT TTTGATCTAC TTTTCGTTCT 
TGTTTAGTCT TTAGNGTTGT TCGAGCTTTT GTCTCCAATT TCAATCAATT 
CTAAGGGTTT TTAGATTCCA AATTTTGTAG CTTCCGTTGA CACGTCGAGT 
TGTCNAACTG GGTTTCGGAT TGATCTTTCN GGAGCTTCTA TTTCTGCTTC 
CTTATCTACT GNAATGAAAT TGCCACTGAN ATAAATAGGT NAGC

AT1G01340.1

Model type: Protein coding
Short Description: cyclic nucleotide gated channel 10
Curator Summary: member of Cyclic nucleotide gated channel family
Computational Description: cyclic nucleotide gated channel 10 (CNGC10); FUNCTIONS IN: ion channel activity, cyclic nucleotide binding, calmodulin binding; INVOLVED IN: ion transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Ion transport (InterPro:IPR005821), Cyclic nucleotide-binding-like (InterPro:IPR018490), RmlC-like jelly roll fold (InterPro:IPR014710), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: cyclic nucleotide-gated channel 13 (TAIR:AT4G01010.1); Has 3364 Blast hits to 3209 proteins in 253 species: Archae - 0; Bacteria - 35; Metazoa - 1554; Fungi - 48; Plants - 1027; Viruses - 0; Other Eukaryotes - 700 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G01340.2

Model type: Protein coding
Short Description: cyclic nucleotide gated channel 10
Curator Summary: member of Cyclic nucleotide gated channel family
Computational Description: cyclic nucleotide gated channel 10 (CNGC10); FUNCTIONS IN: ion channel activity, cyclic nucleotide binding, calmodulin binding; INVOLVED IN: ion transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Cyclic nucleotide-binding-like (InterPro:IPR018490), Ion transport (InterPro:IPR005821), RmlC-like jelly roll fold (InterPro:IPR014710), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: cyclic nucleotide-gated channel 13 (TAIR:AT4G01010.1).
Link: InterPro Scan - TAIR

AT1G01350.1

Model type: Protein coding
Short Description: Zinc finger (CCCH-type/C3HC4-type RING finger) family protein
Computational Description: Zinc finger (CCCH-type/C3HC4-type RING finger) family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: Zinc finger (CCCH-type/C3HC4-type RING finger) family protein (TAIR:AT5G06420.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR