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15-4825-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Anatomical entity
/structure development stage		 Phenotype
fruit (PO:0009001)
  • decreased length (PATO:0000574)
    (Fruits (Siliques)::short)

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 25736931 [Map]; Strand: c
      • AT1G68560.1 - [+] show detail - alpha-xylosidase 1
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 15-4825-1 - 5-prime edge 
    GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCGG TCTTTAGGTA TGTTCATTTA CTGCTCTGTT 
    TTTTTTGTTA TTGTTTTCTC TCTCTCTTGT CTTAATGTTT TGTGGTAATT 
    TAAATAGGAT TAGTGATTAT GTTTGTGGTC CTATAGTGTT TTAAGCATAG 
    GTTAATGTCT TAATGATGAG TATTAGTATT GGTTCAGGTT CCTATAAGTT 
    TGACTTTTAG TCAAACGAAG AGTCACGTGA ACATAGATTT TGTGTATCAA 
    CCAAACCAAG TGAGATCGAA AACTATTAAA TTAATGTTCC ATTAGTGTTG 
    ATATTTCATT GTAAAGAGTA TCTGATTTTC CGACACAACT TTTANAATAG 
    AAAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 25736939 [Map]; Strand: c
      • AT1G68560.1 - [+] show detail - alpha-xylosidase 1
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 15-4825-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    GTCGGCATAG GAGCAGGTCT TCCGATTAAC TGAGTATACT GATCAACAAC 
    ATTTAACGGC GACGGTCCGG CGATGAAATA GAAATCGAAA ACACCTCCGA 
    TAACTTTATA CGTCAAAGAA TCACCTCTAT AGAAAACATC CATACCATTA 
    CTATTCAAAA GAAGAACAGC ATGAGCATAA GCT

AT1G68560.1

Model type
Protein coding
Short Description
alpha-xylosidase 1
Curator Summary
Encodes a bifunctional alpha-l-arabinofuranosidase/beta-d-xylosidase that belongs to family 3 of glycoside hydrolases.
Computational Description
alpha-xylosidase 1 (XYL1); FUNCTIONS IN: xyloglucan 1,6-alpha-xylosidase activity, xylan 1,4-beta-xylosidase activity, alpha-N-arabinofuranosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: response to cadmium ion, xylan catabolic process, xyloglucan metabolic process; LOCATED IN: apoplast, cell wall, chloroplast, plant-type cell wall; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 31 (InterPro:IPR000322), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolases family 31 protein (TAIR:AT3G45940.1); Has 6339 Blast hits to 5059 proteins in 1114 species: Archae - 86; Bacteria - 4145; Metazoa - 817; Fungi - 695; Plants - 269; Viruses - 0; Other Eukaryotes - 327 (source: NCBI BLink).
Link
InterPro Scan - TAIR