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15-4922-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 1043937 [Map]; Strand: c
      • AT4G02370.1 - [+] show detail - Protein of unknown function, DUF538
        Distance: 731; Region: intergenic
      • AT4G02380.1 - [+] show detail - senescence-associated gene 21
        Distance: 2267; Region: intergenic
    Flanking Genome Sequence: 15-4922-1 - 5-prime edge 
    CCATTGACGA ATGGTTCACG ACCAAAACTG TAATAATAAC GTAGATGTAT 
    GAACTATGAA TCCTTACGAG TTACGGGGAT TAAGTTTAAG CATTAAAGGC 
    CCGAAACTAT AACCGGTTAT TCGATCCATA ACCCGGTTCA GTTGAATTAA 
    GCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 1044053 [Map]; Strand: c
      • AT4G02370.1 - [+] show detail - Protein of unknown function, DUF538
        Distance: 847; Region: intergenic
      • AT4G02380.1 - [+] show detail - senescence-associated gene 21
        Distance: 2151; Region: intergenic
    Flanking Genome Sequence: 15-4922-1 - 3-prime edge 
    GTCAATGGAT CTGAAAGGAC AAATAGGAAA TCAACGAATG TGCACAAACA 
    TTTATTTCCG GTTAAGTCCT TTTAAACCGG TGACGTCGAG CTCTTGAGAG 
    TTGATACTGA TGGCAGTAAA GAGAACAATT TCGTTCTTTC TACCATATGC 
    GACCTAGTAA TGGTAATGAT GTAATGAGAC AGTTCTGTGG GAGGCATCAC 
    CTTATACATG TCCTTGTCAA ACGAATTATG CAGGCATCGA ATAGAAGTCG 
    TGTCTAGCAA AAGATCATTA ACTAAATAGA AATATCAAAT TAACAAAAAT 
    AGTCAACTAT CGATGACTTT TCACTTTTGG AAGAAAAGAA TATAGAAAGT 
    CTACGAAGCT

AT4G02370.1

Model type
Protein coding
Short Description
Protein of unknown function, DUF538
Computational Description
Protein of unknown function, DUF538; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF538 (InterPro:IPR007493); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF538 (TAIR:AT1G02816.1); Has 618 Blast hits to 617 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 617; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G02380.1

Model type
Protein coding
Short Description
senescence-associated gene 21
Curator Summary
Encodes AtLEA5 (late embryogenesis abundant like protein). Also known as SENESCENCE-ASSOCIATED GENE 21 (SAG21). Has a role on oxidative stress tolerance. mRNA levels are elevated in response to various stresses.
Computational Description
senescence-associated gene 21 (SAG21); CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 3 (InterPro:IPR004926); BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant 3 (LEA3) family protein (TAIR:AT1G02820.1); Has 181 Blast hits to 176 proteins in 36 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 181; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR