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15-4955-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 8229006 [Map]; Strand: c
      • AT1G23200.1 - [+] show detail - Plant invertase/pectin methylesterase inhibitor superfamily
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 15-4955-1 - 5-prime edge 
    GNTNTGGATG ACAAAACCAG GANTNNTGGC NCGGTTCTTT GCNGTGATTG 
    ANCGGTGNTC TGTGTTTTTC TGGCCGGTCA TCGGCTTACG AGCNGTAGAT 
    GTTACATGTT TTGGAGGATG GCNGGTTGCG TCTCCGAAGA TGAAATCGAC 
    GGCGCCGTAN ATGTTGCAGT TTCTCAAGAA CTGACGACTA GAATGAAGGT 
    AGAGAGTGTC TTGATAGCCT TTGAAAGAGC AGGCGTAGAA GACGGAGAAG 
    TCTGAACTTG ATCGGAGAGC CACCGNCTGA TGTTTCTCCG GTCCTGCCGT 
    GTTCTCGAAT GTTATGCCTT GTGCGATAAA ACCATTGCCG GAAACAGCTG 
    TTGGCGGATA AAACAAAATT TGTTTGGTTA AATATTAGTC CAAAGGTTAT 
    ATATGTTGAC ACACCAAAAG AACGAGTGAA TTATNTNTNC TTTACCCTAN 
    AAACGTAAAT NGTNTAGTAA TAAAACAAAA TNTAATAGTT NTNTTTTAGA 
    AAATTTGGAA AGACNATNAC TTTTTANATA ATATGGCTAT AAGTTTTTNT 
    TNTNAAGTGT NTGNGCCAAA AATTGANTTN NNTNNATNAN TTTCACTCTT 
    AGAANGNATT TANNAAAAAN TCTCANNTNG NNNGCCCGGC NNNATTACCA 
    AATNTTCNAA CNTATNNGNC NAATCNNNCN TTTGANCNTT NCTTANANNG 
    NNNT

AT1G23200.1

Model type
Protein coding
Short Description
Plant invertase/pectin methylesterase inhibitor superfamily
Computational Description
Plant invertase/pectin methylesterase inhibitor superfamily; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: endomembrane system, cell wall, plant-type cell wall; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily (TAIR:AT2G45220.1); Has 3098 Blast hits to 3048 proteins in 474 species: Archae - 14; Bacteria - 863; Metazoa - 1; Fungi - 203; Plants - 1990; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).
Link
InterPro Scan - TAIR