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15-4971-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 7549617 [Map]; Strand: c
      • AT1G21540.1 - [+] show detail - AMP-dependent synthetase and ligase family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 15-4971-1 - 5-prime edge 
    CATGTGTGCC GCACCAATGG TTCTCAACAT GCTAACCAAC TACCCGTCTC 
    GTAAACCGCT AAAGAACCCG GTTCAGGTAT TATTAAATAC ATCCATGTTC 
    AATACCGGTT TGGTTTATTA AAAACTTCCA TTTGAAAATC ATTTGGTGAA 
    CTTTTGAATA AACTCTGTTT TGTGTTTCTG AAATCAGGTT ATGACCGCCG 
    GAGCTCCACC TCCAGCAGCC ATCATCTCAA GAGCAGAAAC CCTAGGTTTC 
    AACGTCGGTC ATGGGTACGG TTTAACGGAA ACCGGAGGCC CGGTTGTGTC 
    ATGTGCTTGG AAGGCTGAGT GGGATCATCT TGATCCATTG GAAAGAGCAA 
    GACTGAAATC AAGACAAGGA GTAAGAACCA TCGGATTCGC GGAAGTTGAT 
    GTTAGGGACC CGAGAACCGG GAAGAGTGTG GAACACGACG GTGTTTCCGT 
    TGGAGAGATC GTTTTAAAAG GCGGTTCGGT TATGCTTGGT TACTACAAAG 
    ACCCTGAAGG AACCGCAGCG TGTATGAGAG AGGACGGATG GTTCTACAGC 
    GGAGACGTAG GAGTTATACA TGAAGACGGT TACTTGGAAG TTAAAGACCG 
    GTCAAAGGAT GTGATCATAT GCGGAGGAGA GAACATAANT AGTGCCGAGG 
    TTGANACGGN TCTGTATACA AATCCANTNN TTAAAGAANC CGNGGNGGTG 
    GCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 7549688 [Map]; Strand: c
      • AT1G21540.1 - [+] show detail - AMP-dependent synthetase and ligase family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 15-4971-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    ATGTGAGTTA CGTGATGCTT ATCGATCAAG TCATAGATAG TCGGCGCGTC 
    GACTCTACGG GTGCAGACGT TGGTGGCTCC AACCGCCGCA GTGCCCCATG 
    TATACCCCCA ACCATTGGCG TGGAACATTG GTAGAGTCCA CAAGTAAACC 
    GGCCTGTTCG GAAAATGCCA GTCAAGCAAT GAGCTTACGG TTAGCATGAA 
    AATTGCTCTG TGGCTCAACA CTACTCCTTT GGGAGATGAC GTTGTTCCAG 
    AAGTATAGTT GAGAATCATA GGCTGCCACT CGGTTTGAGG ACGGATC

AT1G21540.1

Model type
Protein coding
Short Description
AMP-dependent synthetase and ligase family protein
Computational Description
AMP-dependent synthetase and ligase family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: metabolic process; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), AMP-binding, conserved site (InterPro:IPR020845), AMP-dependent synthetase/ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: AMP-dependent synthetase and ligase family protein (TAIR:AT1G21530.2); Has 76629 Blast hits to 70171 proteins in 3593 species: Archae - 1132; Bacteria - 50179; Metazoa - 3309; Fungi - 3660; Plants - 2281; Viruses - 1; Other Eukaryotes - 16067 (source: NCBI BLink).
Link
InterPro Scan - TAIR