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Mutant Lines
15-5030-1

15-5030-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

5 prime edge [+] show sequence
1. Chromosome: 4; Position: 17902469 [Map]; Strand: w
  - AT4G38150.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
    Distance: -309; Region: promoter
  - AT4G38150.2 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
    Distance: -309; Region: promoter
  - AT4G38160.3 - [+] show detail - Mitochondrial transcription termination factor family protein
    Distance: 0; Region: exon2 (CDS)
  - AT4G38160.1 - [+] show detail - Mitochondrial transcription termination factor family protein
    Distance: 0; Region: exon2 (CDS)
  - AT4G38160.2 - [+] show detail - Mitochondrial transcription termination factor family protein
    Distance: 0; Region: exon2 (CDS)
Flanking Genome Sequence: 15-5030-1 - 5-prime edge
```
GTAGTGGCGT TTATATGGAG GTGACAAATN CGAGCAGCAT CATGTGGTTC 
TTCAGGGACA AAGGTTTCAG ATGATCCGAG TATCGACAAG ATGTTGAGAN 
AATGCAAACA GTTGGAAAAG GCTCAAAGCA GATGTGGCAT CAGAAAACTG 
GGACTACCTG AGTAACATTG TTGGTATCCA AGAGAGAAAA CTCCCTTACA 
TCGTCTCCCG ATGCCCCAAA ATCCTGACTT TACGCCTCGA TGAGAGACTC 
ATCCCCATGG TCGAGTGCCT CTCCAGTCTT GGAAGGAATC CTCGTGAAGT 
TGCTTCCGCC ATTACCAAAT TTCCTCCAAT ACTCTCTCAT AGCGTGGAGG 
AGAAACTCTG TCCCCTTCTT GCTTTCTTTC AAGCGTTGGG TGTGCCTGAG 
ACTCAACTTG GCAAAATGAT ACTTTTTAAC CCAAGGCTTA TCAGCTACAG 
CATCGACACC AAGCTGACAG TGATCGTCAG CTTTCTTGCT AGCCTTGGCC 
TTGATCAAGA TGGGATGATT GGCAAAGTTC TGGTGAAGAA CCCATTTCTT 
ATGGGGTACA GTGTTGATAA AAGGTTACGG CCTACCACTG AATT
```
3 prime edge [+] show sequence
1. Chromosome: 4; Position: 17902353 [Map]; Strand: w
  - AT4G38150.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
    Distance: -193; Region: promoter
  - AT4G38150.2 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
    Distance: -193; Region: promoter
  - AT4G38160.3 - [+] show detail - Mitochondrial transcription termination factor family protein
    Distance: 0; Region: intron1 (5UTR)
  - AT4G38160.1 - [+] show detail - Mitochondrial transcription termination factor family protein
    Distance: 0; Region: intron1 (5UTR)
  - AT4G38160.2 - [+] show detail - Mitochondrial transcription termination factor family protein
    Distance: 0; Region: intron1 (5UTR)
Flanking Genome Sequence: 15-5030-1 - 3-prime edge
```
GCCACTACAA CACACACAAT TTTGCTTAAC TTAGAAATGA TTCGAGCTTG 
AACAAGGAAG TAGAGAGGAA TTTACCTTGG AGGAGAGCCT TTCCGGCTAT 
CCAATTGAAC TGAAAGTGAG AAGCT
```

AT4G38150.1

Model type: Protein coding
Short Description: Pentatricopeptide repeat (PPR) superfamily protein
Computational Description: Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G03560.2); Has 35233 Blast hits to 8000 proteins in 207 species: Archae - 4; Bacteria - 10; Metazoa - 48; Fungi - 167; Plants - 34530; Viruses - 0; Other Eukaryotes - 474 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G38150.2

Model type: Protein coding
Short Description: Pentatricopeptide repeat (PPR) superfamily protein
Computational Description: Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G03560.2); Has 35233 Blast hits to 8000 proteins in 207 species: Archae - 4; Bacteria - 10; Metazoa - 48; Fungi - 167; Plants - 34530; Viruses - 0; Other Eukaryotes - 474 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G38160.1

Model type: Protein coding
Short Description: Mitochondrial transcription termination factor family protein
Computational Description: pigment defective 191 (pde191); CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: Mitochondrial transcription termination factor family protein (TAIR:AT2G21710.1); Has 1644 Blast hits to 948 proteins in 81 species: Archae - 0; Bacteria - 0; Metazoa - 135; Fungi - 0; Plants - 1414; Viruses - 0; Other Eukaryotes - 95 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G38160.2

Model type: Protein coding
Short Description: Mitochondrial transcription termination factor family protein
Computational Description: pigment defective 191 (pde191); CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: Mitochondrial transcription termination factor family protein (TAIR:AT2G21710.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G38160.3

Model type: Protein coding
Short Description: Mitochondrial transcription termination factor family protein
Computational Description: pigment defective 191 (pde191); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: Mitochondrial transcription termination factor family protein (TAIR:AT2G21710.1).
Link: InterPro Scan - TAIR