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15-5331-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22876852 [Map]; Strand: w
      • AT3G61800.1 - [+] show detail - CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2043 (InterPro:IPR...
        Distance: -6; Region: promoter
      • AT3G61810.1 - [+] show detail - Glycosyl hydrolase family 17 protein
        Distance: -316; Region: promoter
    Flanking Genome Sequence: 15-5331-1 - 3-prime edge 
    AATGAAAACG GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC 
    CGGCTTACGA CCGACGACCN CACGACTNNC GTNCTNTTGG AGANNANCNT 
    ATTATGCNAA NTAATGTATG TGCGNTCAGA TAGATAAAAG GATGANCATC 
    CCGGGGCCGN CNACCACNCG NTGCCCTTTA TGATTCGGAG GTCCGACGTT 
    AGTTCGGCAA ACCCTAATGG AGCTCATGAG ACATAACCAC TCTCAGGTTT 
    TTTTCACATT ATTTGAACAA TTTCTGATCC GTTCAATTCA TTGAAACTTG 
    CTCTTTTAAG GACTAGTCAA TGTTGATTGA TCAGGTTTGT TGGTCAAATA 
    ACGCGGTGAT AATTTTCTTT GACAGGTTCG ATATCTGACG CTTTTCATAA 
    TCGACGAGCT ATTCATGANA TCAAAGCTCT TTAGAACTTT GATAATTGAG 
    AATCTTGATC AGCTTTTGAG TTTAAGTATT GGGTTTAGAA GCAATCTGCC 
    TCTTCCTGCA CCACCTGCTG TTGCCACTAC GTTGCGTTCA AAGGCTATTG 
    AGTTCTTGGA GAAGTGGAAT TTGTCTTTTG GGTTTCATTA CAAGGAGCTT 
    ANACTTGGGT TTGATTACCT TAAGAATACC CTCAAGTTAA AGTTCCCTGA 
    TTTACAGGCT AATGCTGCAC GGATTCAACG AGAGAGACNG GANATGGAGA 
    TGAAGACAAA AGAGATTTTG CGGAACAAGT TTGATTCCCT TGANAGTTAG 
    TTTTTGGACT CTTNAGNNTG ANATTGAGGT ACNATAAAGG AAN

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22876919 [Map]; Strand: w
      • AT3G61800.1 - [+] show detail - CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2043 (InterPro:IPR...
        Distance: -73; Region: promoter
      • AT3G61810.1 - [+] show detail - Glycosyl hydrolase family 17 protein
        Distance: -249; Region: promoter
    Flanking Genome Sequence: 15-5331-1 - 5-prime edge 
    GCCGGCAATN NGAANTTCNG ATTTNCTTCT CCTTTCTAAT TTCCGAAGAA 
    GACGATATNA AAAGAAAACC GAAAAAGAAA AAATTATGAT TTGTGTTGGT 
    TTAATATTTG TACCCACTAT AGTCGGTTTA CTTGGTTAAA CGAAATGACT 
    TATTTACCCC TCTCTCCCCA ANGGGNTCGA AGTAACGTAT TTGCCCCTGT 
    TTGTCTAACC TCTATTCACC AACTTAGATG GGTGTTAATG TAATTACNAT 
    AAATATCGTT TATATAGTTG ATGTGAAGTT TTCCTCTTCC CACCAAAATC 
    ACTCAACACA GTCGAGAGAA GATGAAGATG ATCCTGATGA CGACGATGCA 
    AAACGCTTTC TGGATTCTCT TGGTTTTTTC CATCTCAATG GCTTCTTGCT 
    CCACGATTCC ATCGCTTGNA GGTAAATAAT CTGGNGATTC TGNTATACTT 
    TTCCCNAAAA AAAATGGATC TTTTTCTCTC ATTTCCTTCA CTTTNCTCGN 
    TCGTTTTCCA GGGCCACAAA TCGGAATCAA CTACGGANAA TACNGCTCCA 
    TCTTGAANAA GGANNAATCT NCNATNCCNT TGGGGGANTC NNGAAACNTN 
    NAATNTTTTA ACNNNNANGA NTTTTTTTNN NNGTTTNNNG GGNCCNNNGN 
    NNGAANNANN NGGGGGGGNN GGNNNNNNNN CNCNNNG

AT3G61800.1

Model type
Protein coding
Computational Description
CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2043 (InterPro:IPR018610), ENTH/VHS (InterPro:IPR008942); Has 308 Blast hits to 279 proteins in 95 species: Archae - 2; Bacteria - 30; Metazoa - 120; Fungi - 19; Plants - 44; Viruses - 2; Other Eukaryotes - 91 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G61810.1

Model type
Protein coding
Short Description
Glycosyl hydrolase family 17 protein
Computational Description
Glycosyl hydrolase family 17 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: O-Glycosyl hydrolases family 17 protein (TAIR:AT4G29360.1); Has 2169 Blast hits to 2156 proteins in 157 species: Archae - 0; Bacteria - 2; Metazoa - 3; Fungi - 56; Plants - 2095; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).
Link
InterPro Scan - TAIR