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15-5393-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 7766468 [Map]; Strand: c
      • AT1G22030.1 - [+] show detail - CONTAINS InterPro DOMAIN/s: Protein BYPASS related (InterPro:IPR008511); BEST...
        Distance: -5912; Region: intergenic
      • AT1G22040.1 - [+] show detail - Galactose oxidase/kelch repeat superfamily protein
        Distance: -1456; Region: intergenic
    Flanking Genome Sequence: 15-5393-1 - 5-prime edge 
    NTNCAAAGAC NGATGATGGC GNAATCCTGG CNNGGAAANA GTNATTCCNT 
    ATCANTAAAG ANANCGACTA AATNNTANCT CTCNGGGACG AGANCNANCN 
    AGTGGGGAAA GGAAACCCAA ACTACAAATA CATCATATCT TAACAAATAC 
    TTCCCGGATT CATAATCCTG ATAANGAAAA TTAAAAATAC AAAATCTAAA 
    ACAAAGATAG AATCAACAGA TCTGATACTA GGAACCCTCA CAAAAGGAAT 
    CAAAACCAAG ATTCTCCTTA CCACGAACGG CGGTGAGACC AAATCAGCAT 
    CCCGAGACCT GAAGGAAAGC GTCTCAAGAA GAAGGGAAGG AGATCTAGAT 
    CTTCAATGGT GAGTAAACTA GATCTGAGGC GGTGAAGGAA CGAAAAGATC 
    CTGCCTCTGC CATGGATGGA ACGGCCAGAA CTGGAGTTGC ACTTGAAGAA 
    CACAAAAGCA AGTAACCAAC CCAAAAATAA GGAGATTTAG ACTTTGTAGA 
    TGTAGAATTT CAAGTGTATC TATACAAATA GGTGTATATA TACGTATGCA 
    TGAGGAANAT CCTTTCTAAC AANGGNANAN TNNNNTNNAN AAANNNNG

AT1G22030.1

Model type
Protein coding
Computational Description
CONTAINS InterPro DOMAIN/s: Protein BYPASS related (InterPro:IPR008511); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G77855.1); Has 99 Blast hits to 99 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 96; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G22040.1

Model type
Protein coding
Short Description
Galactose oxidase/kelch repeat superfamily protein
Computational Description
Galactose oxidase/kelch repeat superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT1G55270.1); Has 10813 Blast hits to 5578 proteins in 328 species: Archae - 18; Bacteria - 659; Metazoa - 8206; Fungi - 35; Plants - 1449; Viruses - 72; Other Eukaryotes - 374 (source: NCBI BLink).
Link
InterPro Scan - TAIR