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15-5431-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1830450 [Map]; Strand: w
      • AT1G06040.1 - [+] show detail - B-box zinc finger family protein
        Distance: -560; Region: promoter
      • AT1G06040.2 - [+] show detail - B-box zinc finger family protein
        Distance: -560; Region: promoter
    Flanking Genome Sequence: 15-5431-1 - 5-prime edge 
    TTAATATGTA CCATTCGATC AGATTTTTCT TCTTCTTTCA CTTTTTCGTT 
    TTCTCAATCA TAAAAACGAT TAATGCAATC ATTAAAAATA TACTGGCATG 
    TTAACTAACA AAGAAATGAA TGCCTTAGCC GGGTTAGCCC GTTCGAGAAA 
    AAGAATGATC CTAAAAGACA CCNNNACAAA ATTAGGCATG GTTGGTCACA 
    AGAATTGTTG TTGGATATCA CATATCCATC CATATTAGTA AAAACCAATC 
    TATACATCTG TGGTTTTTTT AAAGAATTGA CAAGTTTTTG TTTCTGTTTT 
    TTGGTAATGA AATCGAACAA ATTCAAAGAA TTGTGAAGTT AATAACTCCC 
    AAAACACTTA CTGCTTCTGT ACATGTTCAT CCTTCTGGAT GTCCCCATGA 
    NAAGTATTGT TCATGTTGGC CGTATCTTGA TTAAGCAGAT TAGAGAATCC 
    ATTTCCAATC NATTTNCACC ANCTCNACCN CTCTNAGGNA NNNNGATCCC 
    NCNGGNCNTT ANTGGGGCTT GAGGACANNN NNANANANGN GGGTGANTNN 
    GNNTGNNNNT NNNAAAATNT NCNNNNNC

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1830334 [Map]; Strand: w
      • AT1G06040.1 - [+] show detail - B-box zinc finger family protein
        Distance: -444; Region: promoter
      • AT1G06040.2 - [+] show detail - B-box zinc finger family protein
        Distance: -444; Region: promoter
    Flanking Genome Sequence: 15-5431-1 - 3-prime edge 
    CATATTAACA TAACATGTCG TCATTCCAAG GAATCAATTC ACATGTCATT 
    TTCAAGATTA CAGTGTAGTC GTGTAATATT CTCTGATTTG AGTAAT

AT1G06040.1

Model type
Protein coding
Short Description
B-box zinc finger family protein
Curator Summary
Encodes salt tolerance protein (STO) which confers salt tolerance to yeast cells. Fully complements calcineurin deficient yeast but does not encode a phosphoprotein phosphatase. Sequence has similarities to CONSTANS. STO co-localizes with COP1 and plays a role in light signaling.
Computational Description
SALT TOLERANCE (STO); CONTAINS InterPro DOMAIN/s: Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: salt tolerance homologue (TAIR:AT2G31380.1); Has 1912 Blast hits to 1325 proteins in 114 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 2; Plants - 1809; Viruses - 0; Other Eukaryotes - 96 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G06040.2

Model type
Protein coding
Short Description
B-box zinc finger family protein
Curator Summary
Encodes salt tolerance protein (STO) which confers salt tolerance to yeast cells. Fully complements calcineurin deficient yeast but does not encode a phosphoprotein phosphatase. Sequence has similarities to CONSTANS. STO co-localizes with COP1 and plays a role in light signaling.
Computational Description
SALT TOLERANCE (STO); CONTAINS InterPro DOMAIN/s: Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: salt tolerance homologue (TAIR:AT2G31380.1); Has 1915 Blast hits to 1323 proteins in 114 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 2; Plants - 1814; Viruses - 0; Other Eukaryotes - 94 (source: NCBI BLink).
Link
InterPro Scan - TAIR