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Mutant Lines
15-5493-1

15-5493-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 1; Position: 17456398 [Map]; Strand: c
- AT1G47540.2 - [+] show detail - Scorpion toxin-like knottin superfamily protein
  Distance: -242; Region: promoter
- AT1G47540.1 - [+] show detail - Scorpion toxin-like knottin superfamily protein
  Distance: -228; Region: promoter
- AT1G47550.2 - [+] show detail - exocyst complex component sec3A
  Distance: -724; Region: promoter
- AT1G47550.1 - [+] show detail - exocyst complex component sec3A
  Distance: -773; Region: promoter

GCACAATTTA AATGTTGANN GCTAANTGAG AANAATAAAG TTTTAAATAA 
NCTCGTTGAA GTCTTACCAT ATTTCCCACT ACATTTNGGG TTAGCTNTGN 
AAATATACTN TTTTTTNCAT ATAGNGATGA TAAACANAAG TNATNAATNN 
TGTGGTTTTN NTGAANNCNN NANANTTGCC GGCCCAANCN ANNANNATAA 
AATAGGATCN GCNCAATGAN ANGAGACNAG CANGCACAAT NNATTNANGC 
GTACATNTNA NGCTCCNAGN GAANTAAGNG ATATTANAAA GTAAAGACNC 
GAGAANNGGA CAAAGACNAC AAANTTTGNN CATNCATTAC ANATGCGAGN 
CCANAACCTN NGCCGTGNTN TNGATATGCC TNCANATAAN NCATATNTAT 
GGGNAAANNA ATCGNTANAN TNCGAATTNG GNNNGAAAAC ATGNNNANCA 
NNNNAGNGTN NTNTCGANAN TNGTTNTANT GNGGNNAANG AANNNAAGTN 
TTNNGNNNNN NATGGTCANG NNANGAGANA CCNTTAAACN NATNAGTNNN 
NNAANNAANA NGANAGCGCC NAANNNTCTG CNAGAANGNG ANTTACCANG 
NANAGGTAGA NGGCCNCNNA ANNNAGGNNG GNGNANAAAA ACNGTGGNNA 
NCTCCACCCA CATGNANCNA GATNNAAGTA TTNCCANNNN ANANNNCNNA 
GNNGNGTNGC CGNGCCGGNN ANNNCCAGCG GGTACNNGNA AGGGNNNGGN 
TACANNANNT GGGGGAAAAA CAAA

3 prime edge [+] show sequence

Chromosome: 1; Position: 17456510 [Map]; Strand: c
- AT1G47540.2 - [+] show detail - Scorpion toxin-like knottin superfamily protein
  Distance: -354; Region: promoter
- AT1G47540.1 - [+] show detail - Scorpion toxin-like knottin superfamily protein
  Distance: -340; Region: promoter
- AT1G47550.2 - [+] show detail - exocyst complex component sec3A
  Distance: -612; Region: promoter
- AT1G47550.1 - [+] show detail - exocyst complex component sec3A
  Distance: -661; Region: promoter

GCGTGACCCG GCCGTGCGGN GGATNGTACC CANCTNGAAC TANNCTTATC 
TGAANAAAAT CCATNNANNG CATCCGTCAN CGCATNGGCC GGATNTTGCG 
CTTGGCTGCN NTTGNTACCA ANCNGGGCNG ATAGACCANA CGTGCNTNCN 
AATTTGTATG TACCAACTAC CGAAACTATT GGAACTAGGC CTCAATCGAG 
TATTTGATTT GGTTTCATTC AGTTCTGGTT CTTTCTGTTG TAGAGTTTAT 
GATCCATATA GGAACCAAAT TTTTGGTTAT TTTCAGATAT TTTTGGGTAT 
TTCAGAATAT TTTTAGACAT TTACGATTAT TTTCTAAATA TTTTTTGATA 
TTTTTTTATG ATTATGATAT TTTTGGTTAT TCTATCTAAA AATAATTAAT 
ATTTTGGTTA TTCATCTTTA GATATTTTTG GTTATTTCAG TTCGGATTCT 
AAAATTTAAA ATCCATATAA GTATTTTTAA TTTTGGTTCG GTTGTTGTTC 
GGTTCAATTA TGGTTCGGTT CTTTNNATTN TTTTGNCANG CTTANNNNTT 
TAATTAANGN NNNTTNNTNN TT

AT1G47540.1

Model type: Protein coding
Short Description: Scorpion toxin-like knottin superfamily protein
Computational Description: Scorpion toxin-like knottin superfamily protein; FUNCTIONS IN: ion channel inhibitor activity; INVOLVED IN: defense response; LOCATED IN: endomembrane system, extracellular region; CONTAINS InterPro DOMAIN/s: Scorpion long chain toxin (InterPro:IPR002061), Knottin (InterPro:IPR003614); BEST Arabidopsis thaliana protein match is: trypsin inhibitor protein 2 (TAIR:AT2G43520.1); Has 146 Blast hits to 146 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 145; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G47540.2

Model type: Protein coding
Short Description: Scorpion toxin-like knottin superfamily protein
Computational Description: Scorpion toxin-like knottin superfamily protein; FUNCTIONS IN: ion channel inhibitor activity; INVOLVED IN: defense response; LOCATED IN: endomembrane system, extracellular region; CONTAINS InterPro DOMAIN/s: Scorpion long chain toxin (InterPro:IPR002061), Knottin (InterPro:IPR003614); BEST Arabidopsis thaliana protein match is: trypsin inhibitor protein 2 (TAIR:AT2G43520.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G47550.1

Model type: Protein coding
Short Description: exocyst complex component sec3A
Curator Summary: Encodes a member of the exocyst complex gene family. The exocyst is a protein complex involved in tethering vesicles to the plasma membrane during regulated or polarized secretion.
Computational Description: exocyst complex component sec3A (SEC3A); INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, exocyst; EXPRESSED IN: male gametophyte, cultured cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Exocyst complex, component Exoc1 (InterPro:IPR019160); BEST Arabidopsis thaliana protein match is: exocyst complex component sec3B (TAIR:AT1G47560.1); Has 427 Blast hits to 415 proteins in 159 species: Archae - 5; Bacteria - 8; Metazoa - 155; Fungi - 110; Plants - 105; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G47550.2

Model type: Protein coding
Short Description: exocyst complex component sec3A
Curator Summary: Encodes a member of the exocyst complex gene family. The exocyst is a protein complex involved in tethering vesicles to the plasma membrane during regulated or polarized secretion.
Computational Description: exocyst complex component sec3A (SEC3A); INVOLVED IN: biological_process unknown; LOCATED IN: exocyst; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Exocyst complex, component Exoc1 (InterPro:IPR019160); BEST Arabidopsis thaliana protein match is: exocyst complex component sec3B (TAIR:AT1G47560.1).
Link: InterPro Scan - TAIR