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16-0012-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 8241590 [Map]; Strand: c
      • AT3G23130.1 - [+] show detail - C2H2 and C2HC zinc fingers superfamily protein
        Distance: -712; Region: promoter
    Flanking Genome Sequence: 16-0012-1 - 5-prime edge 
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAA TTAAAATATT CTGTAAATAT TTGAAATCAC AGAATATCAA 
    ACTTTTGTAA CACCAACAAA TTTAGCGACC AACAAATAAA ACATTTCACA 
    AGCAGTAGAT ACCATGAGAA AACACTATTT TTAATCATAA TTTTCTCTTA 
    AAGTAGTAGA TATATGTTAT TATTATAAAA GGTAGAGAGG AAAGAGTGAT 
    GGGTGAATAT GTAAAAGATG GGAGTGTATA AATAAGGAAA ACCTCGGCGA 
    GCAAAAGGAC ATATTATATC AAAAGTTTTA TACCAAAAAT GGAAAAGTGG 
    ATGTTCCTTT CTCCCATTTT TCTTAAATAC ATTTAATATA GAATTTATCA 
    TCTATATGTA TTAATAAAGC T

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 8241579 [Map]; Strand: c
      • AT3G23130.1 - [+] show detail - C2H2 and C2HC zinc fingers superfamily protein
        Distance: -723; Region: promoter
    Flanking Genome Sequence: 16-0012-1 - 3-prime edge 
    AATGAAAACG GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC 
    CTGATCATGT TTCGATCGCG ATACAAAAGC GATAACTTGG TTATTTATAA 
    AATTTTCACA ATGCTTGTTT TACATAACAT GATTACAAGA CAATTGACTT 
    TCTTTTTTGT AAAGTGAAAT CCTACACTCA TTTCTACTTC TTTTTCCCCA 
    TCCCATTCTA TTATTTCTTT TTCCTTTCAA TAAAATCATA TTTTATGTTG 
    AGATATTTTT GATAGTGCGA TTTTCTTTTT CATTTGTGAC AAATTGTTTG 
    AGGATTTTAT CTATAAATTG TTTGACAAAT TGTTCAGACT CTCAATATTA 
    ACTTCATTTC CTTCTTAATT ACACATATGC TATCTTTACT CCATATATCT 
    TTTAGGTCTC GTTAAAATTG TGAATATGTT TAATAGATAA CACTATAAAC 
    ACTATTTCAT GATAGCATAA AATCACTGAA TGGTATCTTA AGACAAAATT 
    GGTTGTTGAT TTTCACGAAA CTTAAAGGTG TAACATCATT AAATGAAAGT 
    AATAGATGTA CTTAATTAAC TTGTGTCATC TCCATAGATC AAATCATGGA 
    AAAGCTCGCT TAATACATGT TTACCCCNCA TAAATAAAGN TNCNNNNNNN 
    NGGCNNNNNN CCNNCCT

AT3G23130.1

Model type
Protein coding
Short Description
C2H2 and C2HC zinc fingers superfamily protein
Curator Summary
Flower-specific gene controlling the boundary of the stamen and carpel whorls. Similar to zinc finger transcription factors.
Computational Description
SUPERMAN (SUP); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: flower development, negative regulation of transcription, specification of floral organ identity; LOCATED IN: intracellular; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: zinc finger protein 11 (TAIR:AT2G42410.1); Has 1049 Blast hits to 1049 proteins in 53 species: Archae - 0; Bacteria - 0; Metazoa - 37; Fungi - 0; Plants - 1011; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link
InterPro Scan - TAIR