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16-0067-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 17909666 [Map]; Strand: c
      • AT4G38180.1 - [+] show detail - FAR1-related sequence 5
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 16-0067-1 - 5-prime edge 
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCTTC CCAGTCTCCC TCCTCCGTCG TCTCTCATCT 
    TCCTTTTCAT TCTTCGGTTA TTATAACGTA ATCAATTACA AGTTCCCTTA 
    TCTCTTCTTT TCTGGTTTCT CCCGCGCACG AACGCGCATT CCCTCGTCTT 
    CGCTGCCTCC CAATCTCAAT CTCAGACTTG AAATCAAATC ACGACTGTAA 
    GTGGTTCTAT CTACAGTAGC TAGCTATTTC ATCCTGTTGT GGACAATAGA 
    TAGATAGAAT T

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 17877243 [Map]; Strand: c
      • AT4G38070.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 16-0067-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATTAA 
    CTAGAATCTC AGAGGATCTT CAGAAGAAGT TGCAGATGTG TAACGGTGCG 
    TTGACACAGG AAGAGACAAG AAGAAAACAT CTTGAAATCC AAGTTTCTGA 
    ATT

AT4G38070.1

Model type
Protein coding
Short Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Computational Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: mitochondrion; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G11940.1); Has 194780 Blast hits to 83936 proteins in 3334 species: Archae - 2743; Bacteria - 33979; Metazoa - 84944; Fungi - 15379; Plants - 11807; Viruses - 735; Other Eukaryotes - 45193 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G38180.1

Model type
Protein coding
Short Description
FAR1-related sequence 5
Computational Description
FAR1-related sequence 5 (FRS5); FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to red or far red light; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: MULE transposase, conserved domain (InterPro:IPR018289), Transcription factor, FAR1-related (InterPro:IPR004330), Zinc finger, PMZ-type (InterPro:IPR006564), Zinc finger, SWIM-type (InterPro:IPR007527); BEST Arabidopsis thaliana protein match is: FAR1-related sequence 3 (TAIR:AT2G27110.2); Has 1793 Blast hits to 1580 proteins in 47 species: Archae - 2; Bacteria - 0; Metazoa - 4; Fungi - 136; Plants - 1646; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
Link
InterPro Scan - TAIR