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16-0165-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 14439674 [Map]; Strand: w
      • AT4G29310.1 - [+] show detail - Protein of unknown function (DUF1005)
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 16-0165-1 - 5-prime edge 
    GATCCATCAC AAAAACCTTC GAGTGTTTCT TCTTCTTCTT CTTCGGAATT 
    TTGAAATTTG AACTTTGAGA GATTCGAATT AGAGAGAATT TGAAGATGAA 
    GAAGGAATCA GTTGAATATT TGTCATGAGA GGCAGAGGTC GTTGTTCGTC 
    GTCTTCTTGA TGGTTCTCGT TTTTGTAGCA ACATGAGAGT CAGTGGGGCC 
    CAGAGGTTCT ATAACAATTA AGTTTGTTTT ATTTTGAGAT TATAATTTTT 
    GATTGGTGGT ATTGTTTTAT TTTATTTTTA ATCGCGGGAA ATTCGGCGGC 
    ACAATAAAAC AATTCATCAT TTTTCATTAT TTGGTCTTTT TTTTTAATTA 
    AAGGTTTTGT TTAATTTTTC TAGGNGAAGC ACAAATGTAC CATGATTCAT 
    GAATCTTGCA TACTTTGATT ATAAACAAAA CTTTTTTTTA ANGGATNATA 
    TTATATTATT TTNANACCTT TCTTTTGAAT TTAATANGAA AAACCTTTCT 
    TAAAATTTTA GTTAATCATT GTTATTGANA CAATCCAAAT NTTACGNGTT 
    AAATTNGNAT TANAAAAAAA GGGGNNGGNA NNCNAAAGNN NNTTNTTTAA 
    NNNNNNAANN GNNNTNNNNN CCNNAAANNN TNNNNNAAAA NNNNNNNNCC 
    NNNNNAAAAA NNNNCCCCTT NNANANCNNN NTAAANNAAA ANAAAAANAA

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 14439558 [Map]; Strand: w
      • AT4G29310.1 - [+] show detail - Protein of unknown function (DUF1005)
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 16-0165-1 - 3-prime edge 
    GATGGATCCA TGTCCATTTG TACGGCTAAC AATAGATTCA CTAGCTTTGA 
    GACTACCGGA GACAGCGACG AACAAGCAAA TCGGCGGCGA AGTACATCCT 
    TCTTCTACGC CGTGTTACTG CAAACTCCGG ATCAAACATT TCCCTTCACA 
    GAAAGCACTT CTCCCTCTCT CTTCCTTCTC CGACGCTTCA TCTCCACCGG 
    AATCTTCCAC TTCAGCTCCG GGATTTCACC TCGACGCCGA CGCGATCCGA 
    CGAATTTCCG GTAAGAAGAT C

AT4G29310.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF1005)
Computational Description
Protein of unknown function (DUF1005); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plant-type cell wall; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1005 (InterPro:IPR010410); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1005) (TAIR:AT1G10020.1); Has 138 Blast hits to 138 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 137; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link
InterPro Scan - TAIR