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16-0213-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 9076788 [Map]; Strand: c
      • AT1G26230.2 - [+] show detail - TCP-1/cpn60 chaperonin family protein
        Distance: -45; Region: promoter
      • AT1G26233.1 - [+] show detail - SNOR95; snoRNA
        Distance: -606; Region: promoter
      • AT1G26235.1 - [+] show detail - other RNA
        Distance: -216; Region: promoter
    Flanking Genome Sequence: 16-0213-1 - 5-prime edge 
    CTTATTAAAG TGATAAAACG ACAGAAACAT TTAATAATCA GAAAAAACCC 
    GACCCGGTTC TTAACCTAAT CCAAGTTGTT GTCTTCTTAT AAAATGCTTC 
    CATGAATCAC TAATCCAATA CAGCCGTCAA CATTATCGAT TTCATTATAG 
    GATCTTTTTC AATTCTAGTA AAATTTGTTG ATTTATGGGT GTATGCTCAA 
    TTTCTCTTCT GTGTACAAAG TTTGGATTTT TATCTTGATT TCTTGCTATA 
    GTAATTAGAG CACTGTATAG CCCCTTGCAT CTTTGAGATT TATAGATGCA 
    AGGAACAAAT CGAGAAAAGG GTACTCAATT GGTGCTATAT TTTGGCTTTT 
    TACGCTTCTT TTGTTGGGTT GTTCAATAGT TGAGCTTCTC AGAAATGTGT 
    ATTGGCCAAT AGCTGAAATC TGGGTATTGA GTGGTGTTAG TTTGTTTAAT 
    TTTGTATTGA AAGGAAAACA GAGCATGATG ATGAGAAAAA TGTGCCACTG 
    AATT

AT1G26230.2

Model type
Protein coding
Short Description
TCP-1/cpn60 chaperonin family protein
Computational Description
TCP-1/cpn60 chaperonin family protein; FUNCTIONS IN: ATP binding; INVOLVED IN: protein refolding, cellular protein metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Chaperonin Cpn60 (InterPro:IPR001844); BEST Arabidopsis thaliana protein match is: chaperonin 60 beta (TAIR:AT1G55490.2).
Link
InterPro Scan - TAIR

AT1G26233.1

Model type
Small nucleolar RNA
Short Description
SNOR95; snoRNA
Curator Summary
Encodes a H/ACA-box snoRNA (snoR95). Gb: AJ505672
Link
InterPro Scan - TAIR

AT1G26235.1

Model type
Other RNA
Short Description
other RNA
Curator Summary
Encodes a snmRNA. Gb: AJ505711
Link
InterPro Scan - TAIR