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16-0228-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 8609595 [Map]; Strand: c
      • AT1G24270.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -832; Region: promoter
      • AT1G24280.1 - [+] show detail - glucose-6-phosphate dehydrogenase 3
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 16-0228-1 - 5-prime edge 
    ATCTAACAAC ACAGAGCTCA GCTAGATTAA NACCCTGAGG AGAAGCGTAG 
    TGGAAGGAGA GTGANCGGCG TGGGTCANCA ACATTGATCA GCGAANAATG 
    ATGATGATTC GACAAGAAAG GAGAGGAAGA CNAAGTGCNG GGAGCNGGTA 
    GGTAGGGCAG GAGAGAGACN ACNTTTTTCG AATTTGANAC GAGTGTGAGT 
    TATGAATTGG ATTTGGATGC AAACAAATCT CACAATTGCN CTAATGANCG 
    AATTTGTAAG GACAATTGTC AAAGTTTGAG CCTTTTCACG TCTCCCAAAG 
    GTTATGCCTT NCCNNACNTT GTGNGGNTCT GTNGGTATGG TTTAGTGAAA 
    GGTTATTTGC AAATATTATT ATTATTCAAT TCACAAGTGG CCCTTTGATT 
    TCTCTTGAAA CAAGGATTTG CAACTACTAT ATTGTTGCAT TTTCATGAGC 
    TCTTAAAATT GATAAGCANT ACTAGTAGTG GCCCTNNNC

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 8609711 [Map]; Strand: c
      • AT1G24270.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -948; Region: promoter
      • AT1G24280.1 - [+] show detail - glucose-6-phosphate dehydrogenase 3
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 16-0228-1 - 3-prime edge 
    TGTTAGATCG CAGAGGAGGT CCGTTCAGAG TTCTGTTGTC GTGCAAGATG 
    GTAACTTTAA TTGGATTCTC AATTGGGTTT TCTTCTTTAT GCCTTGCTTT 
    GCCGGTAACT TGAAAGCT

AT1G24270.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G13090.1); Has 84 Blast hits to 83 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 84; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G24280.1

Model type
Protein coding
Short Description
glucose-6-phosphate dehydrogenase 3
Curator Summary
Encodes a plastidic glucose-6-phosphate dehydrogenase that is sensitive to reduction by DTT and whose mRNA is most highly expressed in root.
Computational Description
glucose-6-phosphate dehydrogenase 3 (G6PD3); CONTAINS InterPro DOMAIN/s: Glucose-6-phosphate dehydrogenase, C-terminal (InterPro:IPR022675), Glucose-6-phosphate dehydrogenase, active site (InterPro:IPR019796), NAD(P)-binding domain (InterPro:IPR016040), Glucose-6-phosphate dehydrogenase (InterPro:IPR001282), Glucose-6-phosphate dehydrogenase, NAD-binding (InterPro:IPR022674); BEST Arabidopsis thaliana protein match is: glucose-6-phosphate dehydrogenase 2 (TAIR:AT5G13110.1); Has 8421 Blast hits to 8407 proteins in 2362 species: Archae - 0; Bacteria - 5801; Metazoa - 904; Fungi - 180; Plants - 375; Viruses - 4; Other Eukaryotes - 1157 (source: NCBI BLink).
Link
InterPro Scan - TAIR