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16-0262-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30245733 [Map]; Strand: w
      • AT1G80450.1 - [+] show detail - VQ motif-containing protein
        Distance: -950; Region: promoter
    Flanking Genome Sequence: 16-0262-1 - 5-prime edge 
    TTCAACATAT AAAACAATCT GAAAAAGAAA AGAGAACAAA ATTAATAGGC 
    TTTTAGTTTT AGGTTGCGTG AAGGAAGTAG GCAAAAAGCG AAGATTTTTT 
    CCCTCCTTTT TCTTCACACN TTCACAGTTT TTTCTTTGTT CCTTAGCTTT 
    GCTTCCATTT GACTCTATGA ACTTTTTTTC TTGTGTTTCC ATTGAAACCT 
    TCTTTATTAG TATTCCTTTT AGGCTTGAGT AAAATACAGA ACAACTCTTT 
    CTTCATTTCC ATTTGTCCAC TTTTCTTCTT AGATTCTCGC TGTTTCAGTG 
    GGAACTGATA GAAAAAATTG CTATGAAATT TCTGATGAAA AAAGTATCCA 
    ACTAACACCC TTACTAGGAA GTTATCTAAT TTTAAATTCT GAAAACTTAA 
    AAACCATAAG AAAAAAAGTC ACTTTGAATC AAATGTTGAG CCTGGTCAAC 
    CAAACTAANA CAATGTTGAT TGATCCTGTT GACTCGAAGA AAAGGAAAAT 
    CAACAACGTA AGAGTCAAAT TTTATGGTCA AGGGAAGTTT CATTAANAGC 
    CCATCTGCTT TAAACGAATT AAGGCCCAGA GAGGCCCAGT TTTGGAGGTG 
    AAGAAAAACG AGGGAACATG AATTTTTTTT TAATTTTGAA NCACAAATCG 
    GACGGAATTG GANATTCTTT TGAATAAAAG TTTCNTCGAG CTTAAAAAGG 
    AAAAANCGCT TGGNCTCANN GTAAAAAATC NAAATTACCA NCCCGGCCGC

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30245617 [Map]; Strand: w
      • AT1G80450.1 - [+] show detail - VQ motif-containing protein
        Distance: -834; Region: promoter
    Flanking Genome Sequence: 16-0262-1 - 3-prime edge 
    ATGTTGAACA TTTCTATTTA TCTTTGTCCT CCACTAATTA AATCGGATGC 
    ATGATGTATT CTCTCATATT AACAATATAA AATGTAACGT AAGAAGAAGT 
    ACTTTTTTAA AAGTAATCAC AATCTCTAAC AAACAACACC AAAAACTTTA 
    TCGCTTATAT TATTATAATT ACTCAACAAT GTACGGATTT GAAGTCATTT 
    AATTTTTTAC TTTTCAAAAT TTGAACCTCC ATAAATTTTG TAGGGGAAAG 
    TTCTGATGCC CTTCTTGTCA CAGCATTTAT TTCTTTGGGA AATTCAAAAT 
    TCGAAAATTC ATAAAATCAT GGACGTGTGG TAATTACGCT TATTACATAC 
    TATCATATGA TCACGGCCAG GGATCAATCA TTACGCAATT GCCTACAAAG 
    GTTATAACAT TAGGTTTTCT TTTGTATCAC ATATCAATTC GTCAACCACG 
    TCTAAAGTAT ATAACGTTTG TGTACAGAAA AATATATAGT GGAATGCTTT 
    GAAAATATCA ATTAAGTTGC TTGCCGAGTC AACAATGAAC CGACTAAATG 
    TTTCATTATC ACGAATTATC TATATATGAT GTTCCCAGGT ATTGAATTGG 
    CAACACTTCT AATAATGTAT GGTTAGCTTG GGCGTTGACT TTGACATTAT 
    AATCATCTAG AAACAGTTTT AATCCGTATT CAAATCACAA ATATTAGTGA 
    ATTATTAGCA CCTAAACATA TAATTTATTT TTTAGTCAAC TTATCAACTA 
    AAGATT

AT1G80450.1

Model type
Protein coding
Short Description
VQ motif-containing protein
Computational Description
VQ motif-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: VQ (InterPro:IPR008889); BEST Arabidopsis thaliana protein match is: VQ motif-containing protein (TAIR:AT1G28280.2); Has 128 Blast hits to 128 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 128; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR