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16-0284-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 5789207 [Map]; Strand: c
      • AT1G16920.1 - [+] show detail - RAB GTPase homolog A1B
        Distance: 0; Region: exon1 (5UTR)
      • AT1G16930.1 - [+] show detail - F-box/RNI-like/FBD-like domains-containing protein
        Distance: -780; Region: promoter
    Flanking Genome Sequence: 16-0284-1 - 3-prime edge 
    CCTGCGTCAA TGTAATGTTC TGCGACGCTC ACACCGATAC CATCAGCGAT 
    CTCTTTGATG TGCTGTGCCT GAACCGTTAT TACGGATGGT ATGTCCAAAG 
    CGGCGATTTG GAAACGGCAG AGAAGGTACN TGGAAAAAGA ACTTCTGGCC 
    TGGCAGGAGA AACTGCATCA GCCGATTATC ATCACCGAAT ACGGCGTGGA 
    TACGTTAGCC GGGCTGCACT CAATGTACAC CGACATGTGG AGTGAAGAGT 
    ATCAGTGTGC ATGGCTGGAT ATGTATCACC GCGTCTTTGA TCGCGTCAGC 
    GCCGTCGTCG GTGAACAGGT ATGGAATTTC GCCGATTTTG CGACCTCGCA 
    AGGCATATTG CGCGTTGAAG ACGTTTTAAC TTTTAGTAAT AATGTAATTT 
    CATATCTCAA AAACTTAACT TCTCTTTGGT TATATTATTA ATTGACTCAC 
    GCCATGACAT ACATTATTTT TCTAGCTAAA ATTTGTAATC AATGTAAATA 
    TTAAAGATAG TAAAAAAAAA CTACGTGATT AATGTCCTGA GTTGACTATT 
    ATTGTCTGCA TCTTAAAGAT GTCAAAGATG TCAACAAGCA AGCGAGACGA 
    TCTATGTTCC CTTTTCCCGG AAAATTGACG GGGCTTTCGT CTTATTCTTC 
    CTCTCTCGCC GTNATCTCTT TGGGGAATAA ATAATACTTA AGTACTACAG 
    GTAATTTCAG TATCGTTTGA TTCTTTCT

AT1G16920.1

Model type
Protein coding
Short Description
RAB GTPase homolog A1B
Curator Summary
small GTP-binding protein (Rab11)similar to YPT3/RAB11 proteins in yeast and mammals, respectively. YPT3/RAB11 is involved in intracellular protein trafficking.
Computational Description
RAB GTPase homolog A1B (RABA1b); FUNCTIONS IN: GTP binding; INVOLVED IN: intracellular protein transport; LOCATED IN: trans-Golgi network, plasma membrane, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ran GTPase (InterPro:IPR002041), Ras (InterPro:IPR013753), Ras small GTPase, Ras type (InterPro:IPR003577), Rab11-related (InterPro:IPR015595), Small GTPase, Rho type (InterPro:IPR003578), Small GTP-binding protein (InterPro:IPR005225), Ras GTPase (InterPro:IPR001806), Small GTPase (InterPro:IPR020851), Ras small GTPase, Rab type (InterPro:IPR003579); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog A1D (TAIR:AT4G18800.1); Has 28198 Blast hits to 28143 proteins in 766 species: Archae - 30; Bacteria - 158; Metazoa - 14550; Fungi - 4232; Plants - 3316; Viruses - 20; Other Eukaryotes - 5892 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G16930.1

Model type
Protein coding
Short Description
F-box/RNI-like/FBD-like domains-containing protein
Computational Description
F-box/RNI-like/FBD-like domains-containing protein; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT1G80470.1); Has 2349 Blast hits to 2299 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2347; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Link
InterPro Scan - TAIR