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16-0293-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19126323 [Map]; Strand: c
      • AT2G46560.1 - [+] show detail - transducin family protein / WD-40 repeat family protein
        Distance: -467; Region: promoter
      • AT2G46570.1 - [+] show detail - laccase 6
        Distance: -549; Region: promoter
    Flanking Genome Sequence: 16-0293-1 - 3-prime edge 
    TCTTTGGCAA ATGAAGGCGT GCACGAACTT TTGATGATGA CACGACCAAT 
    AAAGAATTAA GACCATCCAA ACTTCCGACC AAGAAGCT

AT2G46560.1

Model type
Protein coding
Short Description
transducin family protein / WD-40 repeat family protein
Computational Description
transducin family protein / WD-40 repeat family protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat (InterPro:IPR001680), RAVE protein 1 C-terminal (InterPro:IPR022033), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); Has 2273 Blast hits to 1588 proteins in 291 species: Archae - 0; Bacteria - 657; Metazoa - 469; Fungi - 690; Plants - 137; Viruses - 0; Other Eukaryotes - 320 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G46570.1

Model type
Protein coding
Short Description
laccase 6
Curator Summary
putative laccase, a member of laccase family of genes (with 17 members in Arabidopsis).
Computational Description
laccase 6 (LAC6); FUNCTIONS IN: laccase activity; INVOLVED IN: oxidation reduction, lignin catabolic process; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: shoot, hypocotyl, root, flower, leaf; CONTAINS InterPro DOMAIN/s: Cupredoxin (InterPro:IPR008972), Multicopper oxidase, type 2 (InterPro:IPR011706), Multicopper oxidase, type 3 (InterPro:IPR011707), Laccase (InterPro:IPR017761), Multicopper oxidase, copper-binding site (InterPro:IPR002355), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: laccase 5 (TAIR:AT2G40370.1); Has 9565 Blast hits to 7786 proteins in 1266 species: Archae - 28; Bacteria - 3648; Metazoa - 481; Fungi - 3482; Plants - 1556; Viruses - 0; Other Eukaryotes - 370 (source: NCBI BLink).
Link
InterPro Scan - TAIR