1. Home
  2. Mutant Lines
  3. 16-0342-1

16-0342-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 17975316 [Map]; Strand: w
      • AT4G38380.1 - [+] show detail - MATE efflux family protein
        Distance: -216; Region: promoter
      • AT4G38390.1 - [+] show detail - root hair specific 17
        Distance: -460; Region: promoter
    Flanking Genome Sequence: 16-0342-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTGACACTC 
    ACTCGCACTT TCGCAGCAAA AATAAAAAGA TATGCTTAGA GCGGTTTGGA 
    CACGACCGAA CGGGACGCAG AAACAAAAAG AAAAGAAGAT ATTTTTCTTG 
    TTTCTAATAA GGTGCCGATG TCAGTGGGCT TTAATGGGCT TAACTAAAGA 
    GAAGCAAAAG GCCCATTTAC CATCGTCTTC CCCAAACAAA AACCGCCTCC 
    CTGCAACGGT TAACCCCTGA TTGAACCCTC TCTCTCTCTG TCTGTTTCTT 
    CGACGATCTC TTTCGCACCG CTCAATCATC CTCCCGATTC CGTAAGTTTC 
    GGTTTTGAAT CGTTTCTTCT CCTCTGCCAC TATCGTCTTC TTCTCGGTTT 
    TCTATATCGT TTTAGTTTCT TTCACCGTCG TTTCTTTTCT CTCCCACGCT 
    CATCCAATTT TCTTCCCCTA AAGAACCGGA ATTTAGGTCA GTTATCATCC 
    TCGAAGCT

AT4G38380.1

Model type
Protein coding
Short Description
MATE efflux family protein
Computational Description
MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity; INVOLVED IN: drug transmembrane transport, transmembrane transport; LOCATED IN: chloroplast; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT2G38330.1); Has 13476 Blast hits to 13444 proteins in 2154 species: Archae - 331; Bacteria - 10835; Metazoa - 81; Fungi - 150; Plants - 389; Viruses - 0; Other Eukaryotes - 1690 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G38390.1

Model type
Protein coding
Short Description
root hair specific 17
Computational Description
root hair specific 17 (RHS17); CONTAINS InterPro DOMAIN/s: GDP-fucose protein O-fucosyltransferase (InterPro:IPR019378); BEST Arabidopsis thaliana protein match is: O-fucosyltransferase family protein (TAIR:AT1G20550.1); Has 829 Blast hits to 827 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 829; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR