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Mutant Lines
16-0452-1

16-0452-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 4; Position: 17903848 [Map]; Strand: w
- AT4G38160.3 - [+] show detail - Mitochondrial transcription termination factor family protein
  Distance: 0; Region: exon4 (CDS)
- AT4G38160.2 - [+] show detail - Mitochondrial transcription termination factor family protein
  Distance: 0; Region: exon3 (3UTR)
- AT4G38170.1 - [+] show detail - FAR1-related sequence 9
  Distance: -710; Region: promoter

CTGCTTAGCC TAACTGCAGA ACAGAATATG CAGCAATGCA GTCTAGCTGC 
TTGTCGGAAG TATGGGTGGG TAAAAAGCCC CTAGTCATTC CACAAATATG 
GAGGCCCCTA GTCAAAGGTC ACATTTGATG ACAAAGAGAT GGTTGATCGT 
TCTCTGCCTA TATAGTATGT ACCTGTCATA TAAAAATGAG ACCCCCTCTG 
CTCTCTCTTT TGGATGAGAT CAACCGTATT TTAAACCGGC CAAACTTGAA 
AGTTTTTTTT TGCTTCAAAT GCTCTTTCAA GTAGAGTCCC TTTTGTTATT 
CACGTTTTGT AGCTATTCTA TTCTCTCTCC TTGGACTGGN GTTTTTGTTC 
TTCGGTTTTT CCGATCAAAG TTGAATCAAG AANAAGTTCG ATNTGTCCGT 
CTTCGCTGNT TCTTGNGGTN GCTTGTTGGG CTTCTGTGCC TTTTTAATTT 
TTTNTATTTT GGGCCTGAGT GCCATGTTTT CGGCATTTCT GCTTTGTNAG 
GGCCTACGTG CCCTTTTCAA GCCTTGNAGG TTTNTTTGGT AAANCCCTAN 
AATAATGNNT GTTGNCGGAC CCAAAAANCC CAANTAGGNC CNGNCTTAAA 
TTNATAATTT NTAAGGGCCC AAAATTAAGG ACTANGCCTG GCCTNCCATN 
NCCCANCTNG AAAAAATGGG TNTNGGNANA NNTAAAAATT TGNCCGNTNT 
NNGGNTCAGA AACNGGNAGG GANGNNGN

3 prime edge [+] show sequence
1. Chromosome: 4; Position: 17903732 [Map]; Strand: w
  - AT4G38160.3 - [+] show detail - Mitochondrial transcription termination factor family protein
    Distance: 0; Region: intron3 (CDS)
  - AT4G38160.2 - [+] show detail - Mitochondrial transcription termination factor family protein
    Distance: 0; Region: exon3 (CDS)
  - AT4G38170.1 - [+] show detail - FAR1-related sequence 9
    Distance: -826; Region: promoter
Flanking Genome Sequence: 16-0452-1 - 3-prime edge
```
CTAAGCAGAC ACTTCTTTTG CTTGTCGGTT GCTGCAATAA TCACAAGCCA 
ATAATGACAC TGACTTATCC AACAACATAT ACATCCCATT TTGATTGCAG 
TTGAATACCT GAAAACACAG GAACCACTCT ATGGATATGC ACTTGATCGG 
GCCATGGTGG TGGTTCTATC ATAATTAGGT GATTTTCAAA AGGAAGTGTA 
GAATCCATGA TAAACGAATG CATAGTGAAT AATCGATGAT ATCTGGAAGA 
AAACACTCTA TTGATATCAC AATCACTCAA GGAAAAGCTC GTGCTAGAAA 
TTGGTGCACA AGCTGAAAAC AGCTTACAGA GAGAGCCTGA TGAAGGAAAA 
AACTAGAGAG AGATATAAAA GCTAGAAGCT
```

AT4G38160.2

Model type: Protein coding
Short Description: Mitochondrial transcription termination factor family protein
Computational Description: pigment defective 191 (pde191); CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: Mitochondrial transcription termination factor family protein (TAIR:AT2G21710.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G38160.3

Model type: Protein coding
Short Description: Mitochondrial transcription termination factor family protein
Computational Description: pigment defective 191 (pde191); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: Mitochondrial transcription termination factor family protein (TAIR:AT2G21710.1).
Link: InterPro Scan - TAIR

AT4G38170.1

Model type: Protein coding
Short Description: FAR1-related sequence 9
Computational Description: FAR1-related sequence 9 (FRS9); FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to red or far red light; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PMZ-type (InterPro:IPR006564), MULE transposase, conserved domain (InterPro:IPR018289), Zinc finger, SWIM-type (InterPro:IPR007527); BEST Arabidopsis thaliana protein match is: FAR1-related sequence 5 (TAIR:AT4G38180.1); Has 1073 Blast hits to 1051 proteins in 28 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 2; Plants - 1067; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link: InterPro Scan - TAIR