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16-0496-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 21930169 [Map]; Strand: w
      • AT5G54040.1 - [+] show detail - Cysteine/Histidine-rich C1 domain family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 16-0496-1 - 5-prime edge 
    ATTGCGGTCA TCTACCACAC CACAAGCATT ACAAGTAAAG GTGACTAACC 
    TTAACAAGAG GGTGAGACTA TGCTCGTGGT GTTTTGGTTC GAAAATTGCG 
    AGTGGTGGTC CCAATGCCAT TAAACATTTT TTATCCACGT TTATGTTGCA 
    TATCGTGCAA CGAGCAAAGA AAGACGGAAG ATTACGTAGC CGAGCAAAGA 
    AAGACGTAAG CT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 21930100 [Map]; Strand: w
      • AT5G54040.1 - [+] show detail - Cysteine/Histidine-rich C1 domain family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 16-0496-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    GCAATCCTTA CGTATGTCTT GAATGCAATT TGATGGTCCA CAAAGAGTGT 
    GTTCAGAATC TACCGCGAGT CATAAGCATA AATCGTCATG ACCATCGCAT 
    ATCTCATACT TTTCACCTTG GTCAAGGAGA AGGAGATTGG GAGTGTGGAG 
    TTTGTCGGAA GACGATCAAT TGGGTCTATG GAGGTTATAA ATGCTCTCGT 
    TGTCCTAGTT ATGCCGTTCA TTCAAGATGT GCAACAAGAT ACGAAGTGTG 
    GGATGGTTTA GAGCTCGAAG ATGTGCCCGA AGAAGAAGAA GAAATCGAAG 
    ATCCATTCAA GGTAATTAAT GAAAAGGGAG ATATCATTCA TTTTAGTCAT 
    GAAGAGCATG TTCTCAGATT GGACGAGATT TATGTAACGG ATGATGCTAA 
    CATGCGTTGT CGGTGTTGCG TTCTTGCTAT CAACGGTGAC CCATGCTACA 
    GATGCGTNGA ATGTGATTTC ATCCTTCACA AANCGTGTGC GAATCTTCCT 
    CGAAAATGCN ACNTTTNTTG CNTAAGCATA AACTCACTCT TTNNTCNNCN 
    GGNNACCCNN NNTTTGAGAT NTNAANNNNN NANNNNNNGN NCNNNNANCN 
    NNCNT

AT5G54040.1

Model type
Protein coding
Short Description
Cysteine/Histidine-rich C1 domain family protein
Computational Description
Cysteine/Histidine-rich C1 domain family protein; INVOLVED IN: intracellular signaling pathway; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, hypocotyl, root; CONTAINS InterPro DOMAIN/s: Protein kinase C-like, phorbol ester/diacylglycerol binding (InterPro:IPR002219), DC1 (InterPro:IPR004146), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT5G54050.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR