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16-0510-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30056170 [Map]; Strand: w
      • AT1G79910.1 - [+] show detail - Regulator of Vps4 activity in the MVB pathway protein
        Distance: 0; Region: exon5 (CDS)
      • AT1G79910.2 - [+] show detail - Regulator of Vps4 activity in the MVB pathway protein
        Distance: 0; Region: exon5 (CDS)
    Flanking Genome Sequence: 16-0510-1 - 5-prime edge 
    GCCACTTGGT CGCTGACTCC ACGGAGGAAT GTTGCAGTTT GTAGAGAGAT 
    TCAAAGCAGA GCCGCCGTCA AAGGAAATGA AAGTGGAGCT GCTGCAGGAA 
    ATCGCCAGAG AGTACTCCAT AAAATGGGAT GCCAAGTCTT TAGAGCAGAG 
    ATTGTACACA CCACCTCATC ATCATCATGT CCATGTGAGT CGTCTTCTTT 
    GTCTGCTTTA AATACATCAT TCCATTTGAT TTGAGCCAGA CTCTCTCATT 
    CATAAGCAGA CGGAAACTGA AGAACCAAAA ACAGAGAAGA CCAACAACGA 
    ACCCGAAAAG ACCATGGAAA AGAGAAGCAG CCTTTCGTTC CATGGCAGAG 
    AAGACTCGAT GGATGACAGC AACAAGTCCA TAATGAGTAC AAGCGAAGAA 
    GACTCCATGA GTACAAGCGG GAGTTGTATG ACTGGCCCGG AGGATGATCC 
    TGAAATGAAA CCTTTCTACT ACAGATTCAT GACTCCTGCG CCTTACACCA 
    AACCCAAGAT CGAAAAACAG GAAAGTCTTC CGGGAGAAGA TGACTACATC 
    TCATCTCATG GACACCGGTG AGTAATCTAT CTTTAAGTAA AGATACTTTT 
    ATTTTATTTG GCCCTGAGAT AATATGTATG TTGGCNNAAA CAGATCGCCG 
    ACGGGCGGAA AACCAAAGCC GAGATCANTG GGGACCAAGA TTCCCAAACC 
    CCGCCCCCTG AAGCCGGAAA CGGNAGGGGG ANGNTTNGAA TTNGAAAGNA 
    AG

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30056098 [Map]; Strand: w
      • AT1G79910.1 - [+] show detail - Regulator of Vps4 activity in the MVB pathway protein
        Distance: 0; Region: intron4 (CDS)
      • AT1G79910.2 - [+] show detail - Regulator of Vps4 activity in the MVB pathway protein
        Distance: 0; Region: intron4 (CDS)
    Flanking Genome Sequence: 16-0510-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATTAG 
    GCAGAGCATA TAAAAAAATA TAGTCAACAA AGAATAAATA CCTCAGGGTT 
    CACAAACTGA TCAAGTGTGT TTCCGTATCT CTCAGCAAAT AAAGATCTGA 
    GGTCGCGTAG CTCAGGGACT TCAGAGACTC TAGCGGCTGC ATATACAAGG 
    GAGGAGATGG CCTCGCGGCA CTCATCAGGG CACCGGCTGC TCAAGCAAAA 
    CCCAATATTT ATTTAGATGA ATGGAATCCA TGCAAGTAAA TTAAACAAGT 
    TTAGGGTTAG TTTTTACATG GATTTCTGTA ATAGAGAGAC ATTGGATGCA 
    ACACAGTTGC AGAATTGCTC CAAAAACTCA TAACAAGCCA GCCTCCTTTT 
    CTCCTCTATA AGCCCTTCTG CCTGTCACAC AAACACATGC CATCAGAACC 
    ATCTCTCTAT GTACTTACTC ATGTGACTTA TAACTTAAAA CAGGGGCCAA 
    GAATT

AT1G79910.1

Model type
Protein coding
Short Description
Regulator of Vps4 activity in the MVB pathway protein
Computational Description
Regulator of Vps4 activity in the MVB pathway protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF292, eukaryotic (InterPro:IPR005061); BEST Arabidopsis thaliana protein match is: Regulator of Vps4 activity in the MVB pathway protein (TAIR:AT4G32350.1); Has 592 Blast hits to 592 proteins in 162 species: Archae - 0; Bacteria - 3; Metazoa - 147; Fungi - 112; Plants - 281; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G79910.2

Model type
Protein coding
Short Description
Regulator of Vps4 activity in the MVB pathway protein
Computational Description
Regulator of Vps4 activity in the MVB pathway protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF292, eukaryotic (InterPro:IPR005061); BEST Arabidopsis thaliana protein match is: Regulator of Vps4 activity in the MVB pathway protein (TAIR:AT1G52315.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR