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16-0539-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 793356 [Map]; Strand: c
      • AT4G01840.1 - [+] show detail - Ca2+ activated outward rectifying K+ channel 5
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 16-0539-1 - 5-prime edge 
    GTTGTGGGCT GATGAGTGGT TCCATTTACC AACAAATTAG GAATCTCTGA 
    ATCTTGAAAA GCTAATAAAA ATGAAATCTT TTACCANNCN GGGCCGNCCG 
    ACCACACGTN CCCTATNAGA GAGAGGAGTG TGATTGGTGT TTTGGATTAG 
    CAATTTGTTT ATAGAATGGG GCACACATAG TATGCCACGT ATGAAAATCA 
    GATTTATCGT CAGACCACAT GTGTATTATT ATTGTTAGTT CATGGCTTCA 
    CGCAAGTAAG CGTTTAGGTT TTGATTGGTA ATGGTATTTT TAATGCAATT 
    TTGCAAGTAT TTTGTCAATT TTTAAAATTT GTATAGTGTT AACTGTTAAA 
    TAAAATATAT GATTATCTTT TGATTTTAAA AATATATATT ATTAAAATAA 
    ATGAGTATTT AGTATATTAT TTTATGTCTT TCCACGATTA TAAAATTACA 
    ATTTACCAAT CGAAATTTTA GTAGGCAAGC AAAATTTATG TGAGAGATTT 
    CATTTCATCG ACTATGCGTT ATCCATTTTT ATCCATNAAN NNNNGGGCCC 
    CTTNNNTTNG GGNNAANTNA AANANNNNAA NNCCNGGGNN NNNNNNACCC 
    CCNNCCCCCN NT

AT4G01840.1

Model type
Protein coding
Short Description
Ca2+ activated outward rectifying K+ channel 5
Curator Summary
Encodes AtTPK5, a member of the Arabidopsis thaliana K+ channel family of AtTPK/KCO proteins. AtTPK5 is targeted to the vacuolar membrane. May form homomeric ion channels in vivo.
Computational Description
Ca2+ activated outward rectifying K+ channel 5 (KCO5); FUNCTIONS IN: outward rectifier potassium channel activity; INVOLVED IN: potassium ion transport; LOCATED IN: plant-type vacuole membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Potassium channel, two pore-domain (InterPro:IPR003280), Ion transport 2 (InterPro:IPR013099); BEST Arabidopsis thaliana protein match is: Ca2+ activated outward rectifying K+ channel 6 (TAIR:AT4G18160.1); Has 4836 Blast hits to 4447 proteins in 1041 species: Archae - 139; Bacteria - 2196; Metazoa - 1258; Fungi - 189; Plants - 266; Viruses - 0; Other Eukaryotes - 788 (source: NCBI BLink).
Link
InterPro Scan - TAIR