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16-0552-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 1379033 [Map]; Strand: c
      • AT2G04100.1 - [+] show detail - MATE efflux family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 16-0552-1 - 5-prime edge 
    TTCCAAGGTA AAGAAAGGAT CGTTGACAAG AACTAAAGAT CTCCAAGAAG 
    ATAATGGAAG ATCCACCTTT TATTGGGAGA CAATCAGATA ATCACCGGAA 
    GTCTTAAGCC GACGCCGACA TGGAGGATGA ATTTCACGGC GGAGCTCAAG 
    AACCTCAGCC GNATGGCGCT GCCTATGGCC ACCGTGACTG TTGCTCAATA 
    TCTATTACCC GTTATCTCAG TCATGGTCGC CGGCCACCGC AGCGAACTCC 
    AGCTCTCAGG CGTTGCTCTT GCCACTTCTT TTACAAACGT ATCCGGCTTC 
    AGTGTCATGG TAACTACTAA CTAGTTGTTA TTAATCCTCA GTTTCAAGAT 
    CCATTCGAAT CTCAAAGTCT TGAATGTTTT TTTGCAGTTT GGTTTAGCGG 
    GTGCACTTGA AACTCTATGT GGCCAAGCT

AT2G04100.1

Model type
Protein coding
Short Description
MATE efflux family protein
Computational Description
MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: drug transmembrane transport, transmembrane transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: MATE family transporter related protein (InterPro:IPR015521), Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT2G04090.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR