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Mutant Lines
16-0559-1

16-0559-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 1; Position: 1742707 [Map]; Strand: w
- AT1G05800.1 - [+] show detail - alpha/beta-Hydrolases superfamily protein
  Distance: 88; Region: intergenic
- AT1G05805.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
  Distance: -2066; Region: intergenic

GTGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
CCCATCCTAC TTTCATCCAN NTNTNGAGGA TGNATGTGCC NAACCNACTA 
CAAGAAAGGT NNATTTTNCA ACATCCAAGA TAAAGCATTG CTGTCGTCAT 
CTANTCACNA NGCTGAACNA NAATAATNAT TATTCTTCTC TTAGCTATTA 
TGAGTNNACA AATATACTAC TTTNCGNTNG GNNAAAGCTC TCANCAGNNG 
ATGAAGTNCA AGAACTCAAG ATTGTGAATG AAAAAGGGAC ATCATCCAAT 
ATCAGGCGTG TACATATTAG CATTGTCGTG TATCTTTTTA TATTATAGTC 
CATTTTAGTC CTAATCGATA GATGTATTTT TTTTTGTTTT ATTAGTTATA 
AAAACAGACA GATCTATTAT TAATCTGTTA TGGTTAATNG GTTATNGNAT 
ATTATTATAG TANAAGGGAC GNGAGGTACC ANCGTNTTAN ATTATAAATA 
TAAATAATGG CCAAAGACAA AGCCNTTTGT CAAAACTTNA ACGNNATTAT 
AACCTGGNGG ATNAANANTG ANCCNNTNNN AANTCNTNTT TNC

3 prime edge [+] show sequence
1. Chromosome: 1; Position: 1742710 [Map]; Strand: w
  - AT1G05800.1 - [+] show detail - alpha/beta-Hydrolases superfamily protein
    Distance: 91; Region: intergenic
  - AT1G05805.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
    Distance: -2063; Region: intergenic
Flanking Genome Sequence: 16-0559-1 - 3-prime edge
```
ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCA 
GTACATTTCT TATGCTACGT AAAAGATAGG GCAATAATTA TTTTGTCCTA 
TCTTCAAAAA AGGATC
```

AT1G05800.1

Model type: Protein coding
Short Description: alpha/beta-Hydrolases superfamily protein
Curator Summary: Encodes a galactolipase. Located in the chloroplast. Involved in the initial step of jasmonic acid biosynthesis. Expressed in vegetative tissues and is necessary for the biosynthesis of basal-level JAs in vegetative tissues.
Computational Description: DONGLE (DGL); CONTAINS InterPro DOMAIN/s: Lipase, class 3 (InterPro:IPR002921); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT2G31690.1); Has 1183 Blast hits to 1177 proteins in 252 species: Archae - 0; Bacteria - 234; Metazoa - 21; Fungi - 238; Plants - 544; Viruses - 3; Other Eukaryotes - 143 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G05805.1

Model type: Protein coding
Short Description: basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Computational Description: basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: cytosol; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT2G43140.2); Has 2662 Blast hits to 2007 proteins in 137 species: Archae - 2; Bacteria - 54; Metazoa - 424; Fungi - 144; Plants - 1472; Viruses - 0; Other Eukaryotes - 566 (source: NCBI BLink).
Link: InterPro Scan - TAIR