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16-0632-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 321565 [Map]; Strand: c
      • AT4G00752.1 - [+] show detail - UBX domain-containing protein
        Distance: -670; Region: promoter
      • AT4G00753.1 - [+] show detail
        Distance: -799; Region: promoter
    Flanking Genome Sequence: 16-0632-1 - 5-prime edge 
    CTTGTGGCGT TGAATGGTGG TGATTCTGTT GCGCATTTGT TTGTCGATCC 
    ATTGAATAAG AATGAGAGCA GATTTTGGAG CTTCATTATG ACGTCTTCGA 
    TTCCTCTCAT GCCAGATGGT ATAAACNGGA GGTTTGGAAG ATGTATTTCA 
    CCAAGAAACA AGTTACCTTA TCCTTGCGAT GGGCTGAGAC TAGGTTGAGC 
    AGTTGGTGCC AATCACTTGT GTAGTGATGC TGAAGCAATC CTCGAGCAAG 
    CGCTTCCCAA ATTCCAGCTG TATAGCTGCA AGAAAAAAAG AGATGATCTC 
    TGGACTCCAG GCAGTTCGTA CAGAAGTAAC AATCTCCCAC TGCATCTTTG 
    TTCCATTTTT GCATACGGTC ACCGGTAGCA AGTCGANCAN GNGCNCCCTA 
    NNAAACCGAG AAGGAGTGTT TCGGCGTTTC ATGTGTAAAC CATACACCTC 
    TATGCCAAGC CACTGTGTTC GAGGTAGTGC GAATATGATT CCAAGTATCT 
    TTAGTAGAGA ACTTTTCTTT GTTCGAGTTT TTTTTTTTAA ANCTNCNACG 
    GNNTTGGGGA AAACCTTNNN GGACNNANNC NNTNNTGACT TTTNNGGANC 
    NNNAAAANTT TTNTNGNGGG GAAAAAAAAT NNAAAAAAC

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 321681 [Map]; Strand: c
      • AT4G00752.1 - [+] show detail - UBX domain-containing protein
        Distance: -786; Region: promoter
      • AT4G00753.1 - [+] show detail
        Distance: -683; Region: promoter
    2. Chromosome: 4; Position: 4045445 [Map]; Strand: w
      • AT4G06740.1 - [+] show detail - unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BL...
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 16-0632-1 - 3-prime edge 
    GCCACAAGGA CCATCGATAT GAGGCCACCT TCCAACGATG GCTTCAAAGT 
    CGAAGTTAAT CGCAAAGCT

AT4G00752.1

Model type
Protein coding
Short Description
UBX domain-containing protein
Computational Description
UBX domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: UBX (InterPro:IPR001012), Ubiquitin interacting motif (InterPro:IPR003903), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: Ubiquitin-like superfamily protein (TAIR:AT4G11740.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00753.1

Model type
Pseudogene
Curator Summary
Pseudogene of AT5G37890; seven in absentia (SINA) protein, putative
Link
InterPro Scan - TAIR

AT4G06740.1

Model type
Protein coding
Computational Description
unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).
Link
InterPro Scan - TAIR