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16-0638-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 2236439 [Map]; Strand: c
      • AT5G07180.1 - [+] show detail - ERECTA-like 2
        Distance: -3022; Region: intergenic
      • AT5G07190.2 - [+] show detail - seed gene 3
        Distance: -1068; Region: intergenic
    Flanking Genome Sequence: 16-0638-1 - 5-prime edge
    TATATGGACA TGCTACTTTG TTAGTGTTAA GGAAAAGAGA ATTAAGATAA 
    ATATCTTTTA ATGTTGTTGG AAATATTATG TAGTGAATGA TTAAGAGTTG
    TCACGATTGC NGGGATATAA ATATAAAAGG TGTACNGAGA GATATGTCTT
    GCAAGAAATA TGGATATCAC ATTGAGATCC GATTATCCGA ACTCGTATAA
    TCAAGTTCAC ATAGATATAA ATCTAATCCC TTTTCCTTTC TTTTTGGTCA
    AAAGAGATAA ACTAATCTTT AAAACATCAA AAATTTATAA TAAAAGATAT
    TATACGATAA ATACTTTTTG CCAGAGTAAT GTTACATTGA AGGAAAACAA
    AATCGAATAG TGTATATATA ATATTAATTC CAAATAATGT AAATGTTTAA
    AACATAGGTT ACTTAAAATT ACTTCCCATG CATCTAGACC AAACAATCTT
    CACAGCTTTT GTCCCAGCTT TTACTACATG TTTTGGGCCT GTTTGATCAC
    GCCACGTGGA TC
  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 2236555 [Map]; Strand: c
      • AT5G07190.2 - [+] show detail - seed gene 3
        Distance: -952; Region: promoter
    Flanking Genome Sequence: 16-0638-1 - 3-prime edge
    TCCATATATA CTTTCGTTTT TTGAGCATGA GAAAATAGAT TTAACTTTAT 
    AAGTTATAAC CATTGTTTCA AATTAATGCA GATCCGAGTA ATAATAATTT
    GAGATGCAAT AATGGTTGTG TCATATCTTG ATTGCTAAAC TTGATACCGC
    CATACCGGTA ACGTGAAGGG AGAGCTTCCA ATTTGTATGC AAGCCTACAT
    CTGACCCAAT TGTTGGCCCA ATATTAACCA ACACCCACAC TAAAAAAAAT
    ACTATGGAGG GAGTAATCTA CATGACTACA TTCCAAAGCA GGCAATATCG
    TTTTTTCATG TCTGAAAACG CAATTTTTTT TTCTAATTGT TAAGTTGGTT
    CAAAANAAAT GAACATGGGT AATAATAAAA ATGATGTATT TGTTTGCAAA
    CAGCAGTTCT CACTTGTCTC TCTCTATATG ATGAAANACA ATGTTGTAAT
    CTTTATAGGT TTCAATATAG CGGGTATACT TGGTGACATA AAGCGTTATG
    AAATTTTAAG CAGTAAATAG GAAATGATAA ATGATTATTA AATTCGTTAT
    TAAAAATGTA ANAAGGAATA GTNCAATATA GAACGGTAAA AAAAATGGCA
    AACCATTTAC TTCAATAAGA AAGGTTAGCA ACCACACTCA GCAAATGGGA
    CACATAGGAT C

AT5G07180.1

Model type
Protein coding
Short Description
ERECTA-like 2
Curator Summary
Encodes a receptor-like kinase that, together with ER and ERL1 governs the initial decision of protodermal cells to either divide proliferatively to produce pavement cells or divide asymmetrically to generate stomatal complexes. It is also important for maintaining stomatal stem cell activity and preventing terminal differentiation of the meristemoid into the guard mother cell. When heterozygous in an er/erl1 null background, plants are female sterile due to cell division defect in the integuments.
Computational Description
ERECTA-like 2 (ERL2); FUNCTIONS IN: kinase activity; INVOLVED IN: stomatal complex morphogenesis, embryo sac development, ovule development; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: ERECTA-like 1 (TAIR:AT5G62230.1); Has 220369 Blast hits to 138160 proteins in 3652 species: Archae - 160; Bacteria - 22012; Metazoa - 72756; Fungi - 10822; Plants - 87289; Viruses - 476; Other Eukaryotes - 26854 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G07190.2

Model type
Protein coding
Short Description
seed gene 3
Curator Summary
Gene is expressed preferentially in the embryo and encodes a unique protein of unknown function.
Computational Description
seed gene 3 (ATS3); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: anchored to membrane, membrane; EXPRESSED IN: embryo, leaf whorl, carpel, seed, leaf; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Lipase/lipooxygenase, PLAT/LH2 (InterPro:IPR008976), Embryo-specific 3 (InterPro:IPR010417); BEST Arabidopsis thaliana protein match is: Embryo-specific protein 3, (ATS3) (TAIR:AT5G62210.1); Has 553 Blast hits to 471 proteins in 85 species: Archae - 0; Bacteria - 34; Metazoa - 135; Fungi - 20; Plants - 243; Viruses - 45; Other Eukaryotes - 76 (source: NCBI BLink).
Link
InterPro Scan - TAIR