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16-0726-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 3606197 [Map]; Strand: c
      • AT2G07880.1 - [+] show detail - transposable element gene
        Distance: 1148; Region: intergenic
      • AT2G07981.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -8789; Region: intergenic
    2. Chromosome: 2; Position: 3607087 [Map]; Strand: c
      • AT2G07880.1 - [+] show detail - transposable element gene
        Distance: 2038; Region: intergenic
      • AT2G07981.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -7899; Region: intergenic
    3. Chromosome: 2; Position: 3607265 [Map]; Strand: c
      • AT2G07880.1 - [+] show detail - transposable element gene
        Distance: 2216; Region: intergenic
      • AT2G07981.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -7721; Region: intergenic
    4. Chromosome: 2; Position: 3619119 [Map]; Strand: w
      • AT2G08986.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 0; Region: exon6 (CDS)
    Flanking Genome Sequence: 16-0726-1 - 5-prime edge 
    GTTTTAAACT AACAAAATCG GTTATTAAAA GCCTAAGTAG TGTTTCCTTG 
    TTAGGAGAGA CAAAGCCAAA GACTCATACG GACTTTGGCC ACACCATGAA 
    AGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18033099 [Map]; Strand: c
      • AT4G38570.1 - [+] show detail - probable CDP-diacylglycerol--inositol 3-phosphatidyltransferase 2
        Distance: 0; Region: exon2 (5UTR)
      • AT4G38570.2 - [+] show detail - probable CDP-diacylglycerol--inositol 3-phosphatidyltransferase 2
        Distance: 0; Region: exon2 (5UTR)
    Flanking Genome Sequence: 16-0726-1 - 3-prime edge 
    AATGTAGAGG TAGACTGACA ACGTCGCCGG TCTCTGTTTA GCCATAACAG 
    AGAGAGAGAG ACGTCAGTTT GGGCAATCTG TTCCCCAACG AAGAAAACAA 
    GGATCTCGCC AATGAAGGGA TACCTACACN GAGATTAGAA AGAAAAAAGG 
    AACAAACTTT GTGGGAAAAT GCGTACGGAC AGAGGAACCC CAAATCCGGT 
    AAATACGTGA ACACACACAC ACAAACAAAG TAGGTCAATC GATTTTCAGA 
    CGCAACTGGA AATATCAAAT CTCAAAGTAA GTATGGGGAA ATTAATTATT 
    TCTCACCTGC CAAAGAGAAA TTGGGAACGA AGGGATC

AT2G07880.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G11090.1)
Link
InterPro Scan - TAIR

AT2G07981.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G08986.1); Has 174 Blast hits to 86 proteins in 29 species: Archae - 0; Bacteria - 13; Metazoa - 51; Fungi - 9; Plants - 37; Viruses - 3; Other Eukaryotes - 61 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G08986.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G40104.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G38570.1

Model type
Protein coding
Short Description
probable CDP-diacylglycerol--inositol 3-phosphatidyltransferase 2
Computational Description
probable CDP-diacylglycerol--inositol 3-phosphatidyltransferase 2 (PIS2); FUNCTIONS IN: phosphotransferase activity, for other substituted phosphate groups; INVOLVED IN: phosphatidylinositol biosynthetic process; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: CDP-alcohol phosphatidyltransferase (InterPro:IPR000462), CDP-diacylglycerol-inositol 3-phosphatidyltransferase, eukaryote (InterPro:IPR014387); BEST Arabidopsis thaliana protein match is: phosphatidylinositol synthase 1 (TAIR:AT1G68000.1); Has 2530 Blast hits to 2530 proteins in 950 species: Archae - 14; Bacteria - 1497; Metazoa - 167; Fungi - 185; Plants - 77; Viruses - 0; Other Eukaryotes - 590 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G38570.2

Model type
Protein coding
Short Description
probable CDP-diacylglycerol--inositol 3-phosphatidyltransferase 2
Computational Description
probable CDP-diacylglycerol--inositol 3-phosphatidyltransferase 2 (PIS2); FUNCTIONS IN: phosphotransferase activity, for other substituted phosphate groups; INVOLVED IN: phosphatidylinositol biosynthetic process; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: CDP-alcohol phosphatidyltransferase (InterPro:IPR000462), CDP-diacylglycerol-inositol 3-phosphatidyltransferase, eukaryote (InterPro:IPR014387); BEST Arabidopsis thaliana protein match is: phosphatidylinositol synthase 1 (TAIR:AT1G68000.1).
Link
InterPro Scan - TAIR