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16-0758-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 7549514 [Map]; Strand: w
      • AT1G21540.1 - [+] show detail - AMP-dependent synthetase and ligase family protein
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 16-0758-1 - 5-prime edge 
    CCTAGGGTTT CTGCTCTTGA GATGATGGCT GCTGGAGGTG GAGCTCCGGC 
    GGTCATAACC TGATTTCAGA AACACAAAAC AGAGTTTATT CAAAAGTTCA 
    CCAAATGATT TTCAAATGGA AGTTTTTAAT AAACCAAACC GGTATTGAAC 
    ATGGATGTAT TTAATAATAC CTGAACCGGG TTCTTTAGCG GTTTACGAGA 
    CGGGTAGTTG GTTAGCATGT TGAGAACCAT TGGTGCGGCA CACATGTGAG 
    TTACGTGATG CTTATCGATC AAGTCATAGA TAGTCGGCGC GTCGACTCTA 
    CGGGTGCAGA CGTTGGTGGC TCCAACCGCC GCAGTGCCCC ATGTATACCC 
    CCAACCATTG NCGTGGAACA TTGGTNGAGT CCACAAGTAA ACCGGCCTGT 
    TCNGAAAATG CCNNNCAAGC NNTGANCTTA CGGNTAGCAT GAAAATTGCT 
    TGGGGGTNAA CAANTAACTN CTTTGGGNGG ATNANNNNNN TCCNNNAANT 
    NTAGNTNANA AAAAANNNGN NNNNNCCCCA NNNNGANGAN NGGANANNNN 
    ANNNGNGNCN NNNNAANANN CCNNNNNCNN AC

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 7549398 [Map]; Strand: w
      • AT1G21540.1 - [+] show detail - AMP-dependent synthetase and ligase family protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 16-0758-1 - 3-prime edge 
    ACCCTAGGTT TCAACGTCGG TCATGGGTAC GGTTTAACGG AAACCGGAGG 
    CCCGGTTGTG TCATGTGCTT GGAAGGCTGA GTGGGATCAT CTTGATCCAT 
    TGGAAAGAGC AAGACTGAAA TCAAGACAAG GAGTAAGAAC CATCGGATTC 
    GCNGGAAGTT GATGTTAGGG ACCCGAGAAC CGGGAAGAGT GTGGAACACG 
    ACGGTGTTTC CGTTGGAGAG ATCGTTTTAA AAGGCGGTTC GGTTATGCTT 
    GGTTACTACA AAGACCCTGA AGGAACCGCA GCGTGTATGA GAGAGGACGG 
    ATGGTTCTAC AGCGGAGACG TAGGAGTTAT ACATGAAGAC GGTTACTTGG 
    AAGTTAAAGA CCGGTCAAAG GATGTGATCA TATGCGGAGG AGAGAACATA 
    AGTAGTGCCG AGGTTGAGAC GGTTCTGTAT ACAAATCCAG TAGTTAAAGA 
    AGCCGCGGTG GTGGCTAAAC CGGATAANAT GTGGGGAGAG ACACCGTGTG 
    CTTTTGTGAG CTTGAANTAT GATANTAATG GTAATGGNTT GGTGACTGAN 
    ANGGAANTAN NGNANTNNNN NNNACANGTT NCCTANNNNT NTNGNTNCNN 
    NGAANTNNTT TTTNNNAGAN CTTNNNNACT TTNTNNANA

AT1G21540.1

Model type
Protein coding
Short Description
AMP-dependent synthetase and ligase family protein
Computational Description
AMP-dependent synthetase and ligase family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: metabolic process; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), AMP-binding, conserved site (InterPro:IPR020845), AMP-dependent synthetase/ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: AMP-dependent synthetase and ligase family protein (TAIR:AT1G21530.2); Has 76629 Blast hits to 70171 proteins in 3593 species: Archae - 1132; Bacteria - 50179; Metazoa - 3309; Fungi - 3660; Plants - 2281; Viruses - 1; Other Eukaryotes - 16067 (source: NCBI BLink).
Link
InterPro Scan - TAIR