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16-0841-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 685746 [Map]; Strand: c
      • AT4G01580.1 - [+] show detail - AP2/B3-like transcriptional factor family protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 16-0841-1 - 5-prime edge 
    GCTGTGATCG GCGGTGAGAG ACTGAGGTGA CTCTGGCCTT CATGTTTCGG 
    GTTGTAACCA TTTTTGTTTG CTGAGAAGAG AAGGAGAAAA TTGAGAGTAG 
    AGAGTGATGA GTGGAGTTAA CCGAGAAGCA AGATAAGTTT TCTTGTCGTT 
    ATGTTAGTAA GATTTTTTCT GACGAGTGTG ACAAAGTTAC TTTAACTCTT 
    TGTACTTTTC CAACAGTCAT TTATACAGTT CCCTAGTCGA AAAGATAAGT 
    CTTACCATTA TTGAAGTTTT TTTTTTNTTT TNGGTNTNCA ANCTTNTNTT 
    TNCNTNTNCN TNTTTTTTAA AAATTTNGGN CAAAAAAAAN CCTTAAAANA 
    AANAATNTTN ANTTNGNAAT CTTTNCAAAA TNTNTNTAAA AAANTTGNTT 
    TTNANTTTNA NTAACCAAAA NGTTTTTTTN ANCCTTTGGG GTTGTAANCA 
    AAAAAAGCTA NANNNNNGGG CNGNNNAAAN NNCNTNCCNT TTT

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 685857 [Map]; Strand: c
      • AT4G01580.1 - [+] show detail - AP2/B3-like transcriptional factor family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 16-0841-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATAAG 
    ATCCTGAGTC GCCGGTGAAG AAGTTCTTCA AGCTGGTCTT ACCTTCAACG 
    ATGAAAGATA AGATGATGGT AATTACCTAA TACTTTGAAA AAACTTGAAA 
    TAAAGTGTTT GCATGTGTGT TATTATTCCT GTTTCAATTT TTAGGGTCTA 
    TATCTGCAGA TTCACTAAAC AGTGTCCATT TCTTTTGTTT TATCTTGGAT 
    TAGAGATCTA TAAGGGACAC ACTAATCTGT TCTTAAGAAA TGTAGAGAAT 
    TTAAGATCTG ACAATTTGTT ACTTGTTTCT GAAAATCTCA TTATGTTTTT 
    GAGCAGAGGA TTCCACCAAG ATTCGTGAAG CTACAAGGGT CTAAACTCTC 
    ATCAGAGGTT GTTACATTAG AGACTCCTGC GGGATATAAG CGTTCCATAA 
    AGCTGAAACG GATCGGTGAA GAGATTTGGT TCCATGAGGG TTGGAGTGAG 
    TTTGCANAGG CTCATTCCAT CGAGGAAGGC CACTTTCTCT TGTTCGAATA 
    CAAGGAGAAT TACCANCCCG GGCCGTNNAC CACNCNTNCC CTATNG

AT4G01580.1

Model type
Protein coding
Short Description
AP2/B3-like transcriptional factor family protein
Computational Description
AP2/B3-like transcriptional factor family protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: AP2/B3-like transcriptional factor family protein (TAIR:AT3G18960.1); Has 469 Blast hits to 437 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 469; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR