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16-0845-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 644644 [Map]; Strand: c
      • AT4G01510.1 - [+] show detail - Arv1-like protein
        Distance: 308; Region: intergenic
      • AT4G01515.1 - [+] show detail - transposable element gene
        Distance: 3048; Region: intergenic
    Flanking Genome Sequence: 16-0845-1 - 5-prime edge 
    GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCT TTACTGTCCG TTTCACAACG TTCATATTTT 
    GCTATTACCA AGTCAAATCA AAACGTTGGA ACTATAAACC GTAAACGCAC 
    TCAAGACTCT TTTAAGNGCA AAAAAATTAT NTATGTCTTT ATTCTTAATA 
    ATGCATCATG CAATACATTG TCTTACATTG CTTTATCACA CTTGATGATT 
    TATGTTTTCT AAAACTTTTC CTAGTTTCCT CTTCTTTGTA CAAATTGGTG 
    AAAATTATTA CTTGTGTCCA AAGTTACTGC ATTTTTAGGG TTTTGTTATA 
    TCATATTCAT TGTAAGAGAG TTGCTGAATC ACCCCAAAAG GAGTTGGATT 
    AAACAAATAG TATATCAAGG TCCAATATTT ATTTTTCTAA ACATATTATC 
    ACAAGTGATT TANACAAGAN AGTTAACGAC CCTNNNGAAT ATATTATGAG 
    ATCACAAGTT CCTTGCANGA GAAGATTACA TGACAGATCC TAAGTGTNCA 
    NAGATCTGAT CCNCCANNAA TNTAATTGNG NGTGCNATGA AANACANNGN 
    TAANNNTNNG GNNNGNGGCT GNTTCNGNNN TNANTNNNNA NNTNNTGNGG 
    GANNTNNNNN NAANANAAAN ANNNNNNGNN NGNNTNNNNN NNNANNA

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 713530 [Map]; Strand: w
      • AT4G01670.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -887; Region: promoter
      • AT4G01671.1 - [+] show detail - unknown protein; LOCATED IN: endomembrane system; Has 30201 Blast hits to 173...
        Distance: -141; Region: promoter
    Flanking Genome Sequence: 16-0845-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCN 
    TANCGTNACN CGGCCGTGCG GATGCACCNT CCCGGNCNGT NCNCCNNCCA 
    TGNCCNAAAN AGGNCTCGTA AAAATTCATC AAGAAATGAT GTTTGTAAAA 
    ACGGATAAAA GTATATAATT TGGAATTTTG AGATATGATA AGATGATGTT 
    TTGGACAGCC TCGTCGTGCG GACTGGTCTT GGTTCTATCT CTTGCACAAA 
    TCTTACGTGT CAGAAGAAGG TTGGCTTACG CAGTAGCTGG TCAAGCTCAC 
    TTAGATCAGC ATAGACGATT TCTAATGTTC CTTTTTTAAT TACGGTTTAA 
    TACACCTAAA TTAAGTTTCA ATAATCAGTG AATTTATTGC TAATCCCAAA 
    GTTCCTACCA AACGGATATC TCTAGATGCC TAAATTACAA GATTAGCCTT 
    TTGCAGTCAT GAGCACGGAC GATGTGTGCG GCTGTGCCAC GTGGAAATTG 
    TCATTCGATT GTTGCTTATG GTAAATTTCT TACACTAATA AGTAGAAGAT 
    ACCAATATCT ATATCTACAT ATATATTTTT GCAGCTATTT TGTGAAATAA 
    ATCCTGAAGT TCGGACTTAT TTACAATGAC TGCCNCAAAT TTTAATGGTT 
    GTTTTANATA ATNANAAAAA ATNTTTCCNN TTNCCNAATA ATTANATATT 
    TGNCCATTTA AAAAATCTTN CCAAAATNTC CCCCNATTAA CCTATNCAAT 
    NANNGGCCNA AATAAAATTN NAAATNTTTA

AT4G01510.1

Model type
Protein coding
Short Description
Arv1-like protein
Computational Description
ARV2; CONTAINS InterPro DOMAIN/s: Arv1-like protein (InterPro:IPR007290); BEST Arabidopsis thaliana protein match is: Arv1-like protein (TAIR:AT1G01020.1); Has 318 Blast hits to 318 proteins in 158 species: Archae - 0; Bacteria - 0; Metazoa - 112; Fungi - 116; Plants - 41; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G01515.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
non-LTR retrotransposon family (LINE), has a 1.1e-18 P-value blast match to GB:AAB41224 ORF2 (LINE-element) (Rattus norvegicus)
Link
InterPro Scan - TAIR

AT4G01670.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G62070.1); Has 141 Blast hits to 139 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 138; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G01671.1

Model type
Protein coding
Computational Description
unknown protein; LOCATED IN: endomembrane system; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR