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16-0861-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 2169768 [Map]; Strand: w
      • AT1G07070.1 - [+] show detail - Ribosomal protein L35Ae family protein
        Distance: 0; Region: exon4 (3UTR)
      • AT1G07080.1 - [+] show detail - Thioredoxin superfamily protein
        Distance: -214; Region: promoter
    Flanking Genome Sequence: 16-0861-1 - 5-prime edge 
    CATNTAAAGC AGNGTGTACT CGNCATCAAG TGGTCTATNA TCTGCAAGCC 
    TTTGTTTATG GACCTTGTTT ATTATTTGAC TCTTTATCCT GAACCTTTTT 
    TGGAGTTAAC AATTTTGGTT AAAATGAGCC TTTTTGATAA GTCGAGTTCA 
    CAAGTTTACC CAAATTTTGC AAAGCCTGAG CTTACTTTGT GTTGAACTAT 
    TGACGGTTAC AGAATGAAAG TGAGACACGT GGCTTTCGAA GCTACACGTG 
    TCTGTAATAA ATTGGTACCA TTGGGAATAG CAATTATCTA ATTTCTCTCG 
    GCTCTTTCAT ATTTATTGAA TGTTCTTTGA AGAAGAAGAA GGCGACGACA 
    CAAAAACCTT GCATTTGCAT CCATGGCGTC GATGCCGAGC AAACTTCTTC 
    CAGTCCTAGT CTGCTACGTT TTTCTTTTCC CCTTTGCATC ATCATCTGAT 
    TATTCTGGGG TATCTCTTCC ATCTTCGTCG CCTAAAGTCT CGGTGGGCCT 
    GTACTACGAG TCTCTCTGTC CCTACTGCTC TTCCTTCATT GTTAACCACC 
    TCGCGAAGCT CTTCGAAGAC GATCTCATAT CAATCGTCGA TCTCCATCTC 
    TCTCCGTGGG GCAATACCAA GCTCCGTTCC GATAACGTCA CTGCCGTTTG 
    CCAGGTACTC CTTCGTTTTC TTCAATTTAC GAATTACCAG C

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 2169652 [Map]; Strand: w
      • AT1G07070.1 - [+] show detail - Ribosomal protein L35Ae family protein
        Distance: 0; Region: intron3 (CDS)
      • AT1G07080.1 - [+] show detail - Thioredoxin superfamily protein
        Distance: -330; Region: promoter
    Flanking Genome Sequence: 16-0861-1 - 3-prime edge 
    TTTAAATGTT ACTCGGATAC ATAAACACTC GAACTCGAGA TCCCTGCAAA 
    AAAACAATCA ACCAACTGTA TTAGAAGAGC TAGGAAAGAG ATAACAACAA 
    TTTCAAACAT ATATAACTGA AATGATTTGG ATTACCATTG ATTTAGGAGG 
    CAAGTTTGAT GTGAATTTGG CTCGAACAAC GCCACTGTTA CCGTGAGGCC 
    TTGTGACTTT GCCCCAAATG CATCGGTAGT GACTACCGTT CTTCTTGGTC 
    TTGGCTTTGT AGATGTAAGC CATCCTTTTA CCTTTGTACC ATGACACTTC 
    CTCAGTGGTG TTAACTCCCT CGACTTGGAC TAGTGACGTG TTGGGATACT 
    GGTTTGACTT CGACCTGTAC ATATTTACAC ACAAAACGTG TTTAAGGACA 
    CCATTCTGAC AAGATCCAAA ACAGAAACAA CACTAAATGG TAGATTGTTT 
    TGCTTAAGTG TATACGCTAA AACTTTATTG CCAATTGGTA AACGTAGAGC 
    TCGTGACTAT AACAAGCAAA ATCAAGATAG TCTCCTTATT TTGTATACCC 
    TATTCCCAAA TTCAACAATC TAAGATCGGA CGAAGACAAG TGAGTCTACT 
    TTCTCAGGAA CTAACTTTTG AATCCTATAA GCNACTAATC TGAGGTCATA 
    AAAAAGNGTN TTAACCANTN TTATCANCCA ANATTNACTG TTTNTGGGAG 
    CTGACCAAAA CNACTAANGN GGAAAACACN C

AT1G07070.1

Model type
Protein coding
Short Description
Ribosomal protein L35Ae family protein
Computational Description
Ribosomal protein L35Ae family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, cytosolic large ribosomal subunit; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L35Ae (InterPro:IPR001780), Ribosomal protein L35Ae, conserved site (InterPro:IPR018266); BEST Arabidopsis thaliana protein match is: Ribosomal protein L35Ae family protein (TAIR:AT1G74270.1); Has 767 Blast hits to 767 proteins in 257 species: Archae - 25; Bacteria - 0; Metazoa - 324; Fungi - 146; Plants - 149; Viruses - 0; Other Eukaryotes - 123 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G07080.1

Model type
Protein coding
Short Description
Thioredoxin superfamily protein
Computational Description
Thioredoxin superfamily protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Gamma interferon inducible lysosomal thiol reductase GILT (InterPro:IPR004911), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: gamma interferon responsive lysosomal thiol (GILT) reductase family protein (TAIR:AT5G01580.1); Has 470 Blast hits to 463 proteins in 91 species: Archae - 0; Bacteria - 0; Metazoa - 320; Fungi - 0; Plants - 101; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).
Link
InterPro Scan - TAIR