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Mutant Lines
16-0863-1

16-0863-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 3; Position: 18673441 [Map]; Strand: w
- AT3G50350.2 - [+] show detail - Protein of unknown function (DUF1685)
  Distance: 0; Region: exon2 (CDS)
- AT3G50350.1 - [+] show detail - Protein of unknown function (DUF1685)
  Distance: 0; Region: exon2 (CDS)
- AT3G50360.1 - [+] show detail - centrin2
  Distance: -896; Region: promoter

CTTCCCGCGT TAGAACTTTA CTTCGCCGTT CAAAAAAGCT ACAACGACGC 
CGTTTCTAAC AAATCAACAA CGTCGTCGTC TTCACTCTCC GACGGCGATA 
CCAGTCCTCA CCACACCGTA TACCAAACCA GNNTGTATAA ACATACACNC 
ACACACATAT ATACACATAC ACGATTATAA ATTTATAATG ATCAAATTTC 
ATTTGAATAG GTGATGATCC GCAAACGGTG AAGACGAAGC TGAAGCAATG 
GGCGAGAGTG GTGGCGTGCA CCGTGAACCA ATCGCCGCCG AGATGATAAT 
TTTAACGACT GTTAAACGTT GTGGGGATAA AGGTTAATCC GGAACAGGGT 
ATGTAAATTG AGACGCCAAA CAGTCGGNGG AGTCCAGTCA GCGTTGTAAT 
ATTACACACA CAATAGTAAA ATACTAATAT ATGTTGGACC CAACTTGTTT 
ATAAGTTATA TTGNTTATTG TATAATGCAT GATTTGATTN GATTTATCTT 
CTTTTANTAT GTGATATATA ATTTTTATAT ATGCAACAGA ACACAATTTG 
CAAAAGTATA TTCTCANATT CTATTGNNTG ACTNTTGTNC ATGGGAGAGA 
GGGGNNGGNT TNTNTTATAT NNNNTG

3 prime edge [+] show sequence
1. Chromosome: 3; Position: 18673325 [Map]; Strand: w
  - AT3G50350.2 - [+] show detail - Protein of unknown function (DUF1685)
    Distance: 0; Region: exon2 (CDS)
  - AT3G50350.1 - [+] show detail - Protein of unknown function (DUF1685)
    Distance: 0; Region: exon2 (CDS)
Flanking Genome Sequence: 16-0863-1 - 3-prime edge
```
GCGGGAAGCG TGTTGGAAAG TCTTGGATCA GCGTTTTCGG GAGATCCGAA 
ACCGAATCCG AGTTCGAAAC TTGCTTTAAG CTCGTCGAGA TCTTCGTCGG 
TCAAGCTCTT ACCACGGCGG AGATGACGGT GGCGGGAGAT ATCTTGACGT 
TTTGACCAAG CT
```

AT3G50350.1

Model type: Protein coding
Short Description: Protein of unknown function (DUF1685)
Computational Description: Protein of unknown function (DUF1685); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, C globular stage, 4 leaf senescence stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1685 (InterPro:IPR012881); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1685) (TAIR:AT4G33985.1); Has 199 Blast hits to 199 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 199; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G50350.2

Model type: Protein coding
Short Description: Protein of unknown function (DUF1685)
Computational Description: Protein of unknown function (DUF1685); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, C globular stage, 4 leaf senescence stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1685 (InterPro:IPR012881); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1685) (TAIR:AT4G33985.1).
Link: InterPro Scan - TAIR

AT3G50360.1

Model type: Protein coding
Short Description: centrin2
Computational Description: centrin2 (CEN2); FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: centrin 2 (TAIR:AT4G37010.2); Has 32825 Blast hits to 20606 proteins in 1695 species: Archae - 1; Bacteria - 190; Metazoa - 13563; Fungi - 7187; Plants - 7027; Viruses - 2; Other Eukaryotes - 4855 (source: NCBI BLink).
Link: InterPro Scan - TAIR