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16-0893-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Anatomical entity
/structure development stage		 Phenotype
seed (PO:0009010)
  • abnormal (PATO:0000460)
    (Seed yield::seed shape)

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 14267947 [Map]; Strand: w
      • AT2G33730.1 - [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 16-0893-1 - 5-prime edge 
    GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCTT CTTTTTCTTC TCTTCTTCTC TCGCTCTGAT 
    TTCTTTTTCA CTTGGATTCT CTTTTTCTAC ATTTTTCCAA AACCCCCCAA 
    TTCTAGCAAA CTCTCAAGGG TTTTAGGCCC ATTAGTTTTT CTTTTGCATT 
    CCGAATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 14267947 [Map]; Strand: w
      • AT2G33730.1 - [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 16-0893-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    GACTTCTAGG TCTTGTTTGC TTTCCCCTCC TGCTAATCGA CCAAGCGAAT 
    AATCTCCAGC TAACCACCGA TGAAGCGAAC AATCAACGAA GTCGTCGGAT 
    CTACCTCCGT CAATACTCTC GATTCCTCCA TTGCTAAGAA GCCTGTCTTC 
    CTCACCAAAA AACAGCGGGA AGAGTTAGCC CTAAAACGCC GCCAGGATCA 
    AATCTCCGAG CAACGTGTCC GTCGTGAGCA ACTTTGGTCG CCCCGAGCCC 
    CGAGACGGAA GATGTCTCCA ATGGAGATAC CAATCNGGGA TTAAGGATCG 
    AGATAGANAT CGGGGACCGA AAACCGANAA CGTGACCGAA ATAGGGANAA 
    AAANTAAAGG GNGNAAATCN AAAACCCGNN ATGGGGNTAA AATTNGGGAT 
    TGGGATTAAA AGCCANAAAA AAACCCNGAA CNGNACCCCN TTGNANAAAA 
    NTTGNAACCC GGNTTGGGGA NNTTNAAAAA GGGGGGGNAA NGGGGNTTTN 
    GGNTGGGGAA GGGNCTGGNN GGGNNAANTT TTTNNAAAAA AAAAAANAAA 
    ANNNNTTTTC CCCCNTTNNA AAANNNGTNT NNNGGGGNTN CTAACCCNAA 
    AAAAAAANNT TTTTTNCCCC NNNAANNNTT TTTTTTTTTT TTTTNNGNA

AT2G33730.1

Model type
Protein coding
Short Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Computational Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: helicase activity, nucleic acid binding, ATP binding, ATP-dependent helicase activity; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G28180.1); Has 125674 Blast hits to 72393 proteins in 3317 species: Archae - 1039; Bacteria - 55089; Metazoa - 31149; Fungi - 11223; Plants - 5926; Viruses - 327; Other Eukaryotes - 20921 (source: NCBI BLink).
Link
InterPro Scan - TAIR