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16-0897-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 17875951 [Map]; Strand: c
      • AT4G38070.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: -584; Region: promoter
    Flanking Genome Sequence: 16-0897-1 - 5-prime edge 
    GNTAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCA TGATGTTACT GCAACTTCCA CGTTATTATT 
    AATAAACTTG TGAAGGATTG TTACGTTTAC GTGCACATGT ATTTTATTCT 
    TATATACATA CGTCAACGTT ATGTATTGAG AGAATATGTC CTACTAAAAC 
    AAAACCTATT TTTGTTTGCA AGTTCTTTTT TGGTTTTTTT TTNGGGTTCA 
    TTNAGGGTAA CGTTTTATAC AAAATCNAAT CANGTTATTA TCTAAAACAG 
    GTAAAAACTN TAACAATANG GNNTNCNACN ATNGTAANAC TNAATACTTA 
    TCCACNCNCN CCGATAAGTN GGACAATACT TTTATNATTC GTAACGACCA 
    AGTAAACATN TAATTTAAAT CTNTTNACAA ATCCTATGAT NTGAATNTNT 
    NAGTTTTNGN CANCNAATTA TAAACATCTN AATTTNGGGT TTGGNGGNAT 
    NAAACTATTC ACACAATCCA TCAAAGTNAA NAACAACAAA ACANGCTTTA 
    TTCCNAATNT TATANGTGGA NAATATAAAT AATAAATTNC CCGGACAAGT 
    TAAACTAAAT NCAGTTGGAT ATATAANACT AATTCCCACG TTTTTACNAT 
    GAANCAAAAG CCAAATCAAA TNGNGGGGNC AACNNAAAAN AATCTTTTTG 
    GTNAAGAAGG ATTTTTTNNA NTAACNNCTA ACAAAAAAAA ATTAACCNAC 
    CCTNTTTCTA NAACATTCNG NAAGTTTATT NNCGGATNGG CTATAATAAA 
    TTTAAAGNCT TCTT

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 17876002 [Map]; Strand: c
      • AT4G38070.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: -533; Region: promoter
    Flanking Genome Sequence: 16-0897-1 - 3-prime edge 
    CAAGTTTGCA CACCANTNNN TCTCANTGAC GTAGNTACTA GTACCCATAA 
    TAAAATCAAT ATAAAAAAAT AAAATCAATT CCGATACAAT TCTTTTAGGC 
    ACCATATGGT AAAAAAAAAA AAAAANGGGG GNCCTAANNA AAANGGGGCC 
    GGGNTTTNNA AAAGGGCCCN NAANNTNNAN GGGNNTTTNN TNANGGGGGT 
    TANNTTNANT NCCCNNNGGG AAANTTNAAA ATNAAAAATT TTTNNCCNTT 
    TTTTTNCNAN GGGNNNTTNA AAANGGNNNA AATTTTTTNN NCCCCNAAAT 
    TTNCCNNTTT TTTTNNNCCG NAAAAATTTN AANAAANNGN NGGNTTTTTT 
    AAANAANTTT NGGGGNNNAA AANNNAGGGN NNNAAAANAN GGGCNTTNNT 
    TTTNGNAAAN GGNCCCCCNN NTTTNNNGGG TTNNNAAATG GGGGGTNNNN 
    TTTNNTTNGG NNGGGNNGNA AANNNAANAA AAAANGGNNT TTTTNGGGNN 
    NAAAAAATTT NNAAAAAATT NGGGGNTTNT TTCNGGGNTA AAANCTTNCC 
    ANAAACNGGG GGAANNNCNN GGGGNGTGGN GAAAAAAANG GGGAAGNGGG 
    TTTNAAAAAC CNNTTNAAAN ANAANCCNNN AANAAAAANN NCCNCCCGGG 
    GGNGNGAANA CGNNGNNNCN TNTTGNNNNN NNNTNNNNC

AT4G38070.1

Model type
Protein coding
Short Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Computational Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: mitochondrion; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G11940.1); Has 194780 Blast hits to 83936 proteins in 3334 species: Archae - 2743; Bacteria - 33979; Metazoa - 84944; Fungi - 15379; Plants - 11807; Viruses - 735; Other Eukaryotes - 45193 (source: NCBI BLink).
Link
InterPro Scan - TAIR