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16-0903-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2922760 [Map]; Strand: w
      • AT3G09510.1 - [+] show detail - Ribonuclease H-like superfamily protein
        Distance: 0; Region: exon1 (CDS)
      • AT3G09520.1 - [+] show detail - exocyst subunit exo70 family protein H4
        Distance: -983; Region: promoter
    2. Chromosome: 2; Position: 13422438 [Map]; Strand: c
      • AT2G31520.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 16-0903-1 - 5-prime edge 
    GGTGGGGAAA ACTTGGAGTC TTCAACAACA AGGTTTGGTG GGAAATTGCG 
    GATGGGATTA ATTAGTAGTA ATGTTTTTAC ACTGATTAAT TAGAACATTT 
    TTTTATGAAT TACATAATTA CNTTGGTTGA AATTAGTTAG TGAACAGTTT 
    CATCCCTTTT ATGTATAGAA AATTGCGGAT GGGATTAATT ACGGAACACC 
    AATCTCATGG GGTTCAATGA AGTTGGCTCA TACGAGTAAT CCGCTTGAGG 
    CAGAAACCAA AGCTCTTTTG GCGGCTTTAC AACAAACCTG GATTCGAGGA 
    TACACACAAG TATTCATGGA AGGCGATTGT CAGACCTAAT TAACTTGATT 
    AATGGGACTT CGTTTCACAG TTCCTTAGCA AATCACCTGG AGGACATCAG 
    TTTTTGGGCA AATAAATTTA CAAGCATTCA GTTTGGTTTT ATTTGGAGAA 
    AGGGAAACAA ATTAGCTCAT GTCTTAGCGA AATATGGTTG TACTTATTCT 
    ACTTTTTATT CTGGTTCTGG TTCTTTACCT ATTTGGCTTG ATCGATACTT 
    TTGTAATGAC CCTAATTGAT TAATATAATT GTTTTGACGT AAAAAAAAAA 
    ATGTTTAGGA AATTGGNTTT TTNNTNAACN AANCCTNNTT TNTTTNNNTT 
    TTANCCCNTT TTTTCNNNNA ATTTNNTNNN NCNNNCCCCC NNCNTAANTA 
    AACAAANCCC CN

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 26774841 [Map]; Strand: c
      • AT1G71002.1 - [+] show detail - MIR858a; miRNA
        Distance: -1116; Region: intergenic
      • AT1G71010.1 - [+] show detail - FORMS APLOID AND BINUCLEATE CELLS 1C
        Distance: -7998; Region: intergenic
    Flanking Genome Sequence: 16-0903-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCA 
    CCCCACCTAC CAATTGCGCA AACTTCCATA ACTTTTCCAC GTCATCTTGA 
    AACCCTACCT ATATTTTTGG TTTTCTTTTT TGTTCTCTTT CTCATTGTAC 
    TTTATTGTAT TAAATCTAAC TAATTCTTAT TTAAATTTTG TTGTACTCAA 
    TGAGTTTTAA TCTTTTCAAC ATATGCTATC TATCACATTT ATTACAATGG 
    ACTGTAAATT TTGATTCAAA TTCATGTTAA TGGTGTACAT CTCCTATTAT 
    CCTGGTAAGT ATAACCATTG ACAGGTTTAA TTATCATCAA AGTTCAATAT 
    ACAATATTAT TGACAATGCT ATGTGTATCT TTTCAGTATA AAAGAAAAAA 
    GTGAAAAAGG TATAATCTAA AGCATATTGA AAAGATAATT CAATACATAT 
    GTTGAATT

AT1G71002.1

Model type
miRNA
Short Description
MIR858a; miRNA
Curator Summary
Encodes a microRNA that targets several MYB family members. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UUUCGUUGUCUGUUCGACCUU
Link
InterPro Scan - TAIR

AT1G71010.1

Model type
Protein coding
Short Description
FORMS APLOID AND BINUCLEATE CELLS 1C
Curator Summary
Encodes a protein that is predicted to act as a phosphatidylinositol-3P 5-kinase, but, because it lacks a FYVE domain, it is unlikely to be efficiently targeted to membranes containing the proposed phosphatidylinositol-3P substrate. Therefore, its molecular function remains unknown.
Computational Description
FORMS APLOID AND BINUCLEATE CELLS 1C (FAB1C); FUNCTIONS IN: 1-phosphatidylinositol-4-phosphate 5-kinase activity, phosphatidylinositol phosphate kinase activity, ATP binding; INVOLVED IN: phosphatidylinositol metabolic process, cellular protein metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Phosphatidylinositol-4-phosphate 5-kinase, core (InterPro:IPR002498); BEST Arabidopsis thaliana protein match is: phosphatidylinositol-4-phosphate 5-kinase family protein (TAIR:AT3G14270.1); Has 4961 Blast hits to 4644 proteins in 430 species: Archae - 584; Bacteria - 4; Metazoa - 1658; Fungi - 1043; Plants - 685; Viruses - 0; Other Eukaryotes - 987 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G31520.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
non-LTR retrotransposon family (LINE), has a 9.9e-44 P-value blast match to GB:AAA39398 ORF2 (Mus musculus) (LINE-element)
Link
InterPro Scan - TAIR

AT3G09510.1

Model type
Protein coding
Short Description
Ribonuclease H-like superfamily protein
Computational Description
Ribonuclease H-like superfamily protein; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), RNA-directed DNA polymerase (reverse transcriptase), related (InterPro:IPR015706); BEST Arabidopsis thaliana protein match is: Ribonuclease H-like superfamily protein (TAIR:AT2G02650.1); Has 1469 Blast hits to 1446 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1468; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G09520.1

Model type
Protein coding
Short Description
exocyst subunit exo70 family protein H4
Curator Summary
A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.
Computational Description
exocyst subunit exo70 family protein H4 (EXO70H4); INVOLVED IN: exocytosis, vesicle docking involved in exocytosis; LOCATED IN: exocyst; EXPRESSED IN: stem, sperm cell, stamen, pollen tube; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Exo70 exocyst complex subunit (InterPro:IPR004140); BEST Arabidopsis thaliana protein match is: exocyst subunit exo70 family protein H3 (TAIR:AT3G09530.1); Has 837 Blast hits to 827 proteins in 111 species: Archae - 0; Bacteria - 0; Metazoa - 132; Fungi - 71; Plants - 622; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).
Link
InterPro Scan - TAIR