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16-0915-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30197575 [Map]; Strand: c
      • AT1G80325.1 - [+] show detail - other RNA
        Distance: 0; Region: exon2 (NonCoding)
      • AT1G80325.2 - [+] show detail - other RNA
        Distance: 0; Region: exon1 (NonCoding)
      • AT1G80320.1 - [+] show detail - 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: 16-0915-1 - 5-prime edge 
    CTCCACGCCT TCATCACCAA CAAAAAGATT TCACATTTAT TGCTATGTCT 
    AGGTGTTTCG ACTAATCGGA TTTGGTTTAG AGCTCACCGT GAGACCCATG 
    CCGGAGAGAA CGACGAATCT TGTTGGGGAC GGGTTAAACC CGACCCATTG 
    GCCGGTCATG GTTTTCAACT GGAGACCTCC GACGTGGTTC TGGTGGAGGA 
    TACTCATGAA GCTCTTATCA GTGTGTGACA CGAAACCAGT GTTTGCTTCA 
    CCGTTTTGCT GTCTCCTGTA ACTCAGCATC CTCAACAGGT ATCGAGTTGA 
    CTCGGAGTGA CTCACAGAAT GCTTCTTCTC ATCCATTCCA TAGCTTTCAT 
    ACAACATCCT CATCACCGTC TGGTCTAGCT CCGCCATTGC CATTGCATAC 
    ATATGTGTGG TTTGACTGCA AATCATCTGA GATGTGACAA CAACGACATA 
    GATGAAATGA AAGAAAGTCT TTATGTGTGT GTTTTTACCA NAAGGGATCG 
    TTTCCCTGTG GCCAGAGTAG TTTANAGAAG TCTTTGCAAG CT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30197691 [Map]; Strand: c
      • AT1G80325.1 - [+] show detail - other RNA
        Distance: 0; Region: exon1 (NonCoding)
      • AT1G80325.2 - [+] show detail - other RNA
        Distance: 0; Region: exon1 (NonCoding)
      • AT1G80320.1 - [+] show detail - 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 16-0915-1 - 3-prime edge 
    GCGTGGAGTA ACGATAGGAT AAAGGCATGT TACCACAAGG TAGTGATGAG 
    TGCAGATGAG ATTCGATACT CTTTAGGGTT TTTCTCCTTC CACAAAGGAA 
    CGATCCGTAC GCCGGAGGAG CTCGTCGATG ACCAACATCC CCTCCGCTAC 
    AATCCTTTCG AGCACGACGG CCTNTTACGC TTCTACGAAT CGTACATCAA 
    TTCTCTCAAG AAATCCAGCG AAGATCTTCT CCAGATCTAC TGCGGCGTCA 
    CACCCTAATC GCCGCCGTAA TTAGATAAAT CGACGGCGAG ATTGTGTATG 
    TTAAATTTGG TCATCATCAT GTGTTTAATC TATAATACAA CTCTTTTTCA 
    GTTTTTGTAA TAATAATACA AGATTCGCAT TTAATTTAGG TTTTTCATTA 
    AGAGAGTATT TGAGAAGGAG ATTTAATTGG TGGGATTAAC GACCCTAATT 
    GCGTCCATGG CCTTGTCGAA AACCTCATAC TTTATTTGGA GATACTCTTT 
    CCATGTAATT GACCGGTATA GAGACGGTTC AACCCGGACC GGGTTAACTT 
    AGAGATANGN GCGATTTGNA CATCACCANN TGGAACCACC CCATANGGGC 
    GCNATNNAAA TTTTNGACTN ANNNTGGNNA NCCNTTGGNT GNGNGGNACG 
    ANCNCTNGGN AGTGNNNCNT ANNNAGCGNG TNGNCCANAC ANTCCACNNN 
    ANCGCNCGTG ANNCNNGCNC CGNNNCNNCN CTC

AT1G80320.1

Model type
Protein coding
Short Description
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Computational Description
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT1G15540.1); Has 5609 Blast hits to 5543 proteins in 727 species: Archae - 0; Bacteria - 610; Metazoa - 47; Fungi - 436; Plants - 3975; Viruses - 0; Other Eukaryotes - 541 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G80325.1

Model type
Other RNA
Short Description
other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT1G80320
Link
InterPro Scan - TAIR

AT1G80325.2

Model type
Other RNA
Short Description
other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT1G80320
Link
InterPro Scan - TAIR