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16-0939-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 15971296 [Map]; Strand: w
      • AT4G33090.1 - [+] show detail - aminopeptidase M1
        Distance: -840; Region: promoter
      • AT4G33100.1 - [+] show detail - CONTAINS InterPro DOMAIN/s: Mitochondrial distribution/morphology family 35/a...
        Distance: 0; Region: intron1 (5UTR)
    Flanking Genome Sequence: 16-0939-1 - 5-prime edge 
    CTCTCAATCT CGGAGAATCT GAGGTTTTAC GGGATATCCC GTTTTAATCA 
    AATTCAGGGT AAATTTCAAT TCTTTTTCCT TCTGAGATCT GATTTTTTTT 
    CTTTTTTTTT GGGGNNTGGA AATTCTNTNA TCCTNNAAAA GCTACCANCC 
    CGGGCCGNNA ACCACCCGNG GCCCTANAGG NAGNNNNNNT NNCCCGGGGG 
    NGGGGNNTNC CC

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 15971180 [Map]; Strand: w
      • AT4G33090.1 - [+] show detail - aminopeptidase M1
        Distance: -724; Region: promoter
      • AT4G33100.1 - [+] show detail - CONTAINS InterPro DOMAIN/s: Mitochondrial distribution/morphology family 35/a...
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 16-0939-1 - 3-prime edge 
    ATTGAGAGTC TCTCGTCTAA CTCAGAAACC GTAAATTTAA ACACCCGACC 
    TAGACGACGA CGACGACGAC GAAGCT

AT4G33090.1

Model type
Protein coding
Short Description
aminopeptidase M1
Curator Summary
encodes an aminopeptidase, a ortholog of mouse microsomal AP (EC 3.4.11.2).
Computational Description
aminopeptidase M1 (APM1); FUNCTIONS IN: aminopeptidase activity; INVOLVED IN: auxin polar transport; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M1, puromycin-sensitive aminopeptidase (InterPro:IPR015568), Peptidase M1, membrane alanine aminopeptidase (InterPro:IPR001930), Peptidase M1, membrane alanine aminopeptidase, N-terminal (InterPro:IPR014782); BEST Arabidopsis thaliana protein match is: Peptidase M1 family protein (TAIR:AT1G63770.3); Has 9205 Blast hits to 9101 proteins in 1870 species: Archae - 122; Bacteria - 4443; Metazoa - 2260; Fungi - 495; Plants - 237; Viruses - 0; Other Eukaryotes - 1648 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G33100.1

Model type
Protein coding
Computational Description
CONTAINS InterPro DOMAIN/s: Mitochondrial distribution/morphology family 35/apoptosis (InterPro:IPR007918); Has 214 Blast hits to 214 proteins in 102 species: Archae - 0; Bacteria - 0; Metazoa - 110; Fungi - 69; Plants - 29; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Link
InterPro Scan - TAIR