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16-0952-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 6099139 [Map]; Strand: c
      • AT2G14370.1 - [+] show detail - transposable element gene
        Distance: 2009; Region: intergenic
      • AT2G14378.1 - [+] show detail - Protein of unknown function (DUF1278)
        Distance: 5730; Region: intergenic
    Flanking Genome Sequence: 16-0952-1 - 5-prime edge 
    GNCGNGGNGN GTANACAANA CATATATGAC GTGGCACTCN NANGNCACAG 
    TCTCTATATN NTAACCACTC ATNGGNGANA TATTCNGATC ATTGATNTAT 
    CNGGACCGCG AGGTTTTNNA GATGNNGNAA CCTCCTCCTC CNTGTCGAGA 
    TGAAGCTGAT TGTTATTGTT GTTAACGAAT CAGGAGAGCT TTTGTTAGTT 
    AAGAGTATCC TTGACCAGAC TTGCGTTGAT ACCATTAGGA GCTTCCGTGT 
    CTTCAAGGCT CCTGATCCTG ATATGTATCA GTTAAGAGTT AGAGTTAGAG 
    TTTGAGCATT ACACTGAGGA GGTATATATT CTCTAGGTGA GGAGGGCTTG 
    CTTCTTGGCT TGCATGTTAC GGTGCCTGGT ATTGAACCGA ACTCCATATA 
    TTTCACCAGT CATGACTCTC CCGATTACCG TAGACAGAAG ACTATGCCCA 
    TTGACATCTG TGCACTAAGC TCTCCAACAT GAAGCTCAAG ACTACTCTAT 
    GGTTTCTCCC TAGGACTTAA GTGGGACTTT CTTCTTGTGT TATGTTCTCT 
    TTGAAAAGCT

AT2G14370.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family, has a 1.2e-116 P-value blast match to GB:AAD22153 polyprotein (Gypsy_Ty3-element) (Sorghum bicolor)
Link
InterPro Scan - TAIR

AT2G14378.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF1278)
Curator Summary
Encodes a ECA1 gametogenesis related family protein
Computational Description
LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1278 (InterPro:IPR010701); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1278) (TAIR:AT4G35165.1); Has 173 Blast hits to 163 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 173; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR